| Protein: | NUP88_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 810 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP88_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
445.0 | [0..1] | [810..1] |
|
|
330.0 | [0..15] | [807..59] |
|
|
325.0 | [0..15] | [807..85] |
|
|
270.0 | [0..10] | [809..2] |
|
|
257.0 | [0..10] | [422..2] |
|
|
213.0 | [0..11] | [401..3] |
|
|
199.0 | [0..257] | [809..1966] |
|
|
185.0 | [0..20] | [803..1] |
|
Region A: Residues: [1-321] |
1 11 21 31 41 51
| | | | | |
1 MKFNFNETED APDSRRSPTP KEPVRWVPLQ SHPVFASLPS SQDEPAVSQL FPRNFMAWDG 60
61 DSRVYYWDSR RYLLHRLSLR LGEPEPSSVL AAVPSKVMQP DLQVTFSVSK ISINKSGSAV 120
121 LLAGSDGICV MYLFGRASVI EDNVICRVVS IGSEIYTSSD SAITLLQASW HPDSDTHLGI 180
181 LSSDAVFRLF DLSSDTELPE QEYYLQPGEP GRSRTASSIY PADFSFGGDH LWDRFTVFIL 240
241 FTDGSIYILC PVVPFGSVYK WESVMEIYND ANMYGVKSSN SLAVSNSSLA IEWLEATFPD 300
301 LTEQGTRGEN ILVVKAQPYA L
|
| Detection Method: |  |
| Confidence: | 4.045757 |
| Match: | 2pm9A |
| Description: | No description for 2pm9A was found. |
|
Region A: Residues: [322-415] |
1 11 21 31 41 51
| | | | | |
1 LDASLALQGP LYKASSGDGD EDFAVREAEC KGRAVSLLYN LVSKDSILVT AWSAGQLQVD 60
61 ALVDEIQPVW ISGNSSRLRM NSHNKIQGVA MICE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [416-810] |
1 11 21 31 41 51
| | | | | |
1 SNISELPVAT SNLPLDHTVW LGHPPPLLRL AMVDLALPKM REGGSLVTLF ADSLLPERIY 60
61 SLHDGGIDST VLHSLPFTSQ ASGKDEALKT PSVHTVLSTC QEESAVSPLL GFVPLSDSFG 120
121 YSWIVAVLSS GECIVAEMKT WDLLLPIHVS TDKTVSSSAI EKKEQENSCI ISKELLAGPK 180
181 IRIAPHALPN QRSTPANSVE GRSILLDYVK LFHENYIEYA HKVHFELQHH APNLKRIIDD 240
241 QHQRLAEANE KISKVEKNQS FLEKRIDKAI ERHDSLEQCL QRLRSLPGTH KKPLTRAELD 300
301 FKSELDQYAG VEVDALQSSI ETLRARVKKS TQKSHKGTVV AASQKKQYSK KNLIQDTQMS 360
361 QLQSTLAKLS LMNSDNSKKV KIVESALKSQ ESSFM
|
| Detection Method: | |
| Confidence: | 15.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
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