YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: IMPA8_ARATH

General Information:
Name(s) found: IMPA8_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|15242247|ref|NP_200013.1| IMPA-8 (IMPORTIN ALPHA ISOFORM 8); binding / protein transporter [Arabidopsis thaliana] [NCBI NR]
  • gi|10177735|dbj|BAB11048.1| importin alpha subunit [Arabidopsis thaliana] [NCBI NR]
  • Importin subunit alpha-8 OS=Arabidopsis thaliana GN=IMPA8 PE=3 SV=1 [Swiss-Prot]
  • (Q9FJ92) Importin alpha subunit [athaliana3702.FASTAC.txt]
  • importin alpha subunit [Arabidopsis thaliana]gi|15242247|ref|NP_200013.1| importin alpha-1 subunit, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Importin alpha-1 subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | importin alpha-1 subunit, putative | chr5:21136250-21138345 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • importin alpha subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: IMPA-8 | importin alpha isoform 8 | chr5:21119024-21121119 REVERSE LENGTH=441 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Importin subunit alpha OS=Arabidopsis thaliana GN=IMPA-8 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 441 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular protein transport [ISS]
    Molecular Function: protein transporter activity [ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWKTEVNEV SDDIIDGLWS DDPPLQLESV TKIRRITSQR DISCVIRSGV VPRLVQLLKN  60
   61 QVFPKLQYEV AWALTNIAVD NPGVVVNNNA VPVLIQLIAS PKDYVREQAI WTLSNVAGHS 120
  121 IHYRDFVLNS GVLMPLLRLL YKDTTLRIAT WALRNLCRGK PHPAFDQVKP ALPALEILLH 180
  181 SHDEDVLKNA CMALCHLSEG SEDGIQSVIE AGFVPKLVQI LQLPSPVVLV PALLTIGAMT 240
  241 AGNHQQTQCV INSGALPIIS NMLTRNHENK IKKCACWVIS NITAGTKEQI QSVIDANLIP 300
  301 ILVNLAQDTD FYMKKEAVWA ISNMALNGSH DQIKYMAEQS CIKQLCDILV YSDERTTILK 360
  361 CLDGLENMLK AGEAEKNSED VNPYCLLIED AEGLEKISKL QMNKNDDIYE KAYKILVTNW 420
  421 FEEDDENNNN NVRCDDVDFQ V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..441] PSI-BLAST 85.0 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  4.58709163830613 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  2.74547353635661 bayes_pls_golite062009
  • binding
    		•  2.61658111885029 bayes_pls_golite062009
  • transporter activity
    		•  2.48700774379895 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.26725422172281 bayes_pls_golite062009
  • protein binding
    		•  2.13529412360404 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  1.91487015967262 bayes_pls_golite062009
  • nuclear export signal receptor activity
    		•  1.29390474721722 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.28481004323799 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.09652988954158 bayes_pls_golite062009
  • RNA binding
    		•  0.97764812194782 bayes_pls_golite062009
  • signal sequence binding
    		•  0.84634722220211 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.252495966234234 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.248585912061178 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.226380819487924 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.217517113570989 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.178770060806735 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.175241020572885 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.174922130116569 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.169755106399802 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.100181463251306 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0635404099346928 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0548082069333885 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.052195223119721 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0405268469927988 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle