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Protein Overview: H2AXB_ARATH

General Information:
Name(s) found: H2AXB_ARATH [Swiss-Prot]
Description(s) found:
Found 19 descriptions.
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  • Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 142 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    nucleolus [IDA]
    Biological Process: nucleosome assembly [IEA]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGAGSGTT KGGRGKPKAT KSVSRSSKAG LQFPVGRIAR FLKAGKYAER VGAGAPVYLS  60
   61 AVLEYLAAEV LELAGNAARD NKKTRIVPRH IQLAVRNDEE LSKLLGSVTI ANGGVLPNIH 120
  121 QTLLPSKVGK NKGDIGSASQ EF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 40.69897 No description for 2f8nK was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  6.14992085916224 bayes_pls_golite062009
  • DNA binding
    		•  4.49118409263799 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.35201412176948 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.08606081850613 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.28941584139552 bayes_pls_golite062009
  • binding
    		•  3.27510691458843 bayes_pls_golite062009
  • transcription factor activity
    		•  2.51581622888695 bayes_pls_golite062009
  • transcription activator activity
    		•  2.43345585762629 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.3574713307436 bayes_pls_golite062009
  • protein binding
    		•  2.1291876005999 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  1.57176056919918 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.30859203490073 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.21819833304707 bayes_pls_golite062009
  • transcription factor binding
    		•  1.15204005455906 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.1297723528047 bayes_pls_golite062009
  • centromeric DNA binding
    		•  1.03586371237592 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.01502031330902 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.00815829879725 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.00815829879725 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.897625638883141 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.86666384236806 bayes_pls_golite062009
  • transferase activity
    		•  0.424228486183795 bayes_pls_golite062009
  • histone binding
    		•  0.218942897869955 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0852726470007639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle