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Protein Overview: gi|6579197, gi|1...

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..62] PSI-BLAST 123.0 No description for 2gv9A was found.
2 View Details [63..146] PSI-BLAST 105.0 Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase
3 View Details [147..1131] PSI-BLAST 70.0 CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA
4 View Details [1132..1242] deduced N/A No confident structure predictions are available.
5 View Details [1243..2096] FFAS03 3.7 Crystal structure of ESCHERICHIA coli DNA Polymerase II
6 View Details [2097..2271] MSA 2.038955 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3
Term Confidence Notes
  • DNA-directed DNA polymerase activity
  • 11.2781960093187 bayes_pls_golite062009
  • DNA polymerase activity
  • 11.2285838712952 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 8.85826259809475 bayes_pls_golite062009
  • DNA primase activity
  • 7.3506495327575 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 4.79232184185512 bayes_pls_golite062009
  • endonuclease activity
  • 4.4589129578563 bayes_pls_golite062009
  • endodeoxyribonuclease activity
  • 4.26114862034453 bayes_pls_golite062009
  • transferase activity
  • 4.02382113115178 bayes_pls_golite062009
  • deoxyribonuclease activity
  • 2.58611070700103 bayes_pls_golite062009
  • RNA polymerase activity
  • 2.29514625858236 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 2.29514625858236 bayes_pls_golite062009
  • ribonuclease activity
  • 2.10426652514018 bayes_pls_golite062009
  • exonuclease activity
  • 1.68989335095363 bayes_pls_golite062009
  • binding
  • 1.63261093703427 bayes_pls_golite062009
  • nucleic acid binding
  • 1.62213678119562 bayes_pls_golite062009
  • DNA binding
  • 1.55767764828811 bayes_pls_golite062009
  • damaged DNA binding
  • 1.08077297289305 bayes_pls_golite062009
  • catalytic activity
  • 1.04899053677564 bayes_pls_golite062009
  • transcription regulator activity
  • 0.863544378011356 bayes_pls_golite062009
  • exoribonuclease activity
  • 0.85780161294346 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 0.78558451404229 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 0.78013028675591 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.433956339585542 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.43313823287883 bayes_pls_golite062009
  • chromatin binding
  • 0.382725239240319 bayes_pls_golite062009
  • nuclease activity
  • 0.332024848299731 bayes_pls_golite062009
  • DNA helicase activity
  • 0.283883977748512 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 0.262305398570872 bayes_pls_golite062009
  • protein binding
  • 0.254364110020667 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.206750180223289 bayes_pls_golite062009
  • single-stranded DNA specific exodeoxyribonuclease activity
  • 0.19596408995795 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
  • 0.193854882336037 bayes_pls_golite062009
  • 5'-3' exonuclease activity
  • 0.154583332107704 bayes_pls_golite062009
  • transcription factor activity
  • 0.093362945686819 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
  • 10.6911520838834 bayes_pls_golite062009
  • DNA polymerase activity
  • 10.645713605123 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 8.39147983801981 bayes_pls_golite062009
  • DNA primase activity
  • 6.94341770434315 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 4.49699229430126 bayes_pls_golite062009
  • endonuclease activity
  • 4.05835176777658 bayes_pls_golite062009
  • endodeoxyribonuclease activity
  • 4.04079853250282 bayes_pls_golite062009
  • transferase activity
  • 3.80228208941612 bayes_pls_golite062009
  • deoxyribonuclease activity
  • 2.53877834217178 bayes_pls_golite062009
  • RNA polymerase activity
  • 1.98947494839394 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 1.98947494839394 bayes_pls_golite062009
  • ribonuclease activity
  • 1.65398017104387 bayes_pls_golite062009
  • binding
  • 1.65023283997779 bayes_pls_golite062009
  • nucleic acid binding
  • 1.58132518850155 bayes_pls_golite062009
  • DNA binding
  • 1.49092185389589 bayes_pls_golite062009
  • exonuclease activity
  • 1.38951646742998 bayes_pls_golite062009
  • catalytic activity
  • 0.985794797454925 bayes_pls_golite062009
  • damaged DNA binding
  • 0.903519456111979 bayes_pls_golite062009
  • transcription regulator activity
  • 0.883308266169681 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.431057665208185 bayes_pls_golite062009
  • exoribonuclease activity
  • 0.430099678408149 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 0.427833022898625 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 0.35941349369351 bayes_pls_golite062009
  • DNA helicase activity
  • 0.280008381637593 bayes_pls_golite062009
  • protein binding
  • 0.267061490746095 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.170862363182338 bayes_pls_golite062009
  • chromatin binding
  • 0.154937729400031 bayes_pls_golite062009
  • nuclease activity
  • 0.126991239633667 bayes_pls_golite062009
  • transcription factor activity
  • 0.104696021012086 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.0394470752191727 bayes_pls_golite062009
  • single-stranded DNA specific exodeoxyribonuclease activity
  • 0.024241485627603 bayes_pls_golite062009
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle