| Protein: | gi|6579197, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 2271 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6579197, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
2241.0 | [0..2] | [2269..19] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MSGDNRRRDR KDTRWSKKPK VVNTAEDELE SKLGFGLFSE GETRLGWLLT FSSSSWEDRD 60
61 TG
|
| Detection Method: |  |
| Confidence: | 123.0 |
| Match: | 2gv9A |
| Description: | No description for 2gv9A was found. |
|
Region A: Residues: [63-146] |
1 11 21 31 41 51
| | | | | |
1 KVYSCVDLYF VTQDGFSFKT KYKFRPYFYA ATKDKMELEL EAYLRRRYER QVADIEIVEK 60
61 EDLDLKNHLS GLQKKYLKIS FDTV
|
| Detection Method: | |
| Confidence: | 105.0 |
| Match: | 1qhtA |
| Description: | Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [147-1131] |
1 11 21 31 41 51
| | | | | |
1 QQLMEVKRDL LHIVERNQAK FDALEAYESI LAGKREQRPQ DCLDSIVDLR EYDVPYHVRF 60
61 AIDNDVRSGQ WYNVSISSTD VILEKRTDLL QRAEVRVCAF DIETTKLPLK FPDAEYDQIM 120
121 MISYMVDGQG FLIINREVTA CVGEDVEDLE YTPKPEFEGY FKVTNVKNEV ELLQRWFYHM 180
181 QELKPGIYVT YNGDFFDWPF IERRASHHGI KMNEELGFRC DQNQGECRAK FACHLDCFAW 240
241 VKRDSYLPQG SHGLKAVTKA KLGYDPLEVN PEDMVRFAME KPQTMASYSV SDAVATYYLY 300
301 MTYVNPFIFS LATIIPMVPD EVLRKGSGTL CEMLLMVEVS TYLPQAQAYK ANVVCPNKNQ 360
361 ADPEKFYQNQ LLESETYIGG HVECLESGQL IDNLGRDLEY AITVEGKMRM DSISNYDEVK 420
421 DEIKEKLEKL RDDPIREEGP LIYHLDVAAM YPNIILTNRL QVHLISPPSI VTDEICTACD 480
481 FNRPGKTCLR KLEWVWRGVT FMGKKSDYYH LKKQIESEFV DAGANIMSSK SFLDLPKVDQ 540
541 QSKLKERLKK YCQKAYKRVL DKPITEVREA GICMRENPFY VDTVRSFRDR RYEYKTLNKV 600
601 WKGKLSEAKA SGNSIKIQEA QDMVVVYDSL QLAHKCILNS FYGYVMRKGA RWYSMEMAGV 660
661 VTYTGAKIIQ NARLLIERIG KPLELDTDGI WCCLPGSFPE NFTFKTIDMK KLTISYPCVM 720
721 LNVDVAKNNT NDQYQTLVDP VRKTYKSHSE CSIEFEVDGP YKAMIIPASK EEGILIKKRY 780
781 AVFNHDGTLA ELKGFEIKRR GELKLIKVFQ AELFDKFLHG STLEECYSAV AAVADRWLDL 840
841 LDVCEISCFF WVIYLIGFLS HFLQNQGKDI ADSELLDYIS ESSTMSKSLA DYGEQKSCAV 900
901 TTAKRLAEFL GVTMVKDKGL RCQYIVACEP KGTPVSERAV PVAIFTTNPE VMKFHLRKWC 960
961 KTSSDVGIRL IIDWSYYKQR LSSAI
|
| Detection Method: | |
| Confidence: | 70.0 |
| Match: | 1q9yA |
| Description: | CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed DNA polymerase activity | 11.2781960093187 | bayes_pls_golite062009 |
| DNA polymerase activity | 11.2285838712952 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 8.85826259809475 | bayes_pls_golite062009 |
| DNA primase activity | 7.3506495327575 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.79232184185512 | bayes_pls_golite062009 |
| endonuclease activity | 4.4589129578563 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 4.26114862034453 | bayes_pls_golite062009 |
| transferase activity | 4.02382113115178 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 2.58611070700103 | bayes_pls_golite062009 |
| RNA polymerase activity | 2.29514625858236 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 2.29514625858236 | bayes_pls_golite062009 |
| ribonuclease activity | 2.10426652514018 | bayes_pls_golite062009 |
| exonuclease activity | 1.68989335095363 | bayes_pls_golite062009 |
| binding | 1.63261093703427 | bayes_pls_golite062009 |
| nucleic acid binding | 1.62213678119562 | bayes_pls_golite062009 |
| DNA binding | 1.55767764828811 | bayes_pls_golite062009 |
| damaged DNA binding | 1.08077297289305 | bayes_pls_golite062009 |
| catalytic activity | 1.04899053677564 | bayes_pls_golite062009 |
| transcription regulator activity | 0.863544378011356 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.85780161294346 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.78558451404229 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.78013028675591 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.433956339585542 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.43313823287883 | bayes_pls_golite062009 |
| chromatin binding | 0.382725239240319 | bayes_pls_golite062009 |
| nuclease activity | 0.332024848299731 | bayes_pls_golite062009 |
| DNA helicase activity | 0.283883977748512 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.262305398570872 | bayes_pls_golite062009 |
| protein binding | 0.254364110020667 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.206750180223289 | bayes_pls_golite062009 |
| single-stranded DNA specific exodeoxyribonuclease activity | 0.19596408995795 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.193854882336037 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 0.154583332107704 | bayes_pls_golite062009 |
| transcription factor activity | 0.093362945686819 | bayes_pls_golite062009 |
|
Region A: Residues: [1132-1242] |
1 11 21 31 41 51
| | | | | |
1 QKVITIPAAM QKVANPVPRV LHPDWLHKKV REKDDKFRQR KLVDMFSSAN KDVVLDTDLP 60
61 VTKDNVEDIE DFCKENRPSV KGPKPIARSY EVNKKQSECE QQESWDTEFH D
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1243-2096] |
1 11 21 31 41 51
| | | | | |
1 ISFQNIDKSV NYQGWLELKK RKWKVTLEKK KKRRLGDLRS SNQVDTHEIN QKVGQGRGGV 60
61 GSYFRRPEEA LTSSHWQVCT IIQLVPSPQS GQFFAWVVVE GLMLKIPLSI PRVFYINSKV 120
121 PIDEYFQGKC VNKILPHGRP CYSLTEACVK IQEDQFKKES KKRAALLADP GVEGIYETKV 180
181 PLEFSAICQI GCVCKIDNKA KHRNTQDGWE VGELHMKTTT ECHYLKRSIP LVYLYNSTST 240
241 GRAIYVLYCH VSKLMSAVVV DPFNGNELLP SALERQFRDS CLELSLDSLS WDGIRFQVHY 300
301 VDHPEAAKKI IQRAISEYRE ENCGPTVAVI ECPDFTFMKE GIKALDDFPC VRIPFNDDDN 360
361 SYQPVSWQRP AAKIAMFRCA AAFQWLDRRI TQSRYAHVPL GNFGLDWLTF TIDIFLSRAL 420
421 RDQQQVLWVS DNGVPDLGGI NNEEAFFADE VQQTSLVFPG AYRKVSVELK IHNLAVNALL 480
481 KSNLVNEMEG GGFMGFEQDV NPRGINSNDN TSFDETTGCA QAFRVLKQLI HSCLTDVRKS 540
541 KNIYADSILQ RLSWWLCSPS SKLHDPALHL MLHKVMQKVF ALLLTDLRRL GAIIIYADFS 600
601 KVIIDTVKFD LSAAKAYCES LLSTVRNRLV SSLLDIHVYD LKSHGLHSFS CHDFCASPLT 660
661 YNYAGIRADD EISLDEVTIE PKWSVARHLP EYIEVWRQNP HSNQCSFSEN KKHVATHGPF 720
721 FLDTDAFHLS WQRDFIIIIA KFIFDPWKFA IENKKGSSES LEAQMIEYLR EQIGSTFINM 780
781 LVKKVDDIMS HMKEINVSDA SRVSGQAPKG DYSLEFIQVI SAVLALDQNV QQDVLLKTLF 840
841 ITDFIHKSNL ISGN
|
| Detection Method: | |
| Confidence: | 3.7 |
| Match: | 1q8iA |
| Description: | Crystal structure of ESCHERICHIA coli DNA Polymerase II |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed DNA polymerase activity | 10.6911520838834 | bayes_pls_golite062009 |
| DNA polymerase activity | 10.645713605123 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 8.39147983801981 | bayes_pls_golite062009 |
| DNA primase activity | 6.94341770434315 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.49699229430126 | bayes_pls_golite062009 |
| endonuclease activity | 4.05835176777658 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 4.04079853250282 | bayes_pls_golite062009 |
| transferase activity | 3.80228208941612 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 2.53877834217178 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.98947494839394 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.98947494839394 | bayes_pls_golite062009 |
| ribonuclease activity | 1.65398017104387 | bayes_pls_golite062009 |
| binding | 1.65023283997779 | bayes_pls_golite062009 |
| nucleic acid binding | 1.58132518850155 | bayes_pls_golite062009 |
| DNA binding | 1.49092185389589 | bayes_pls_golite062009 |
| exonuclease activity | 1.38951646742998 | bayes_pls_golite062009 |
| catalytic activity | 0.985794797454925 | bayes_pls_golite062009 |
| damaged DNA binding | 0.903519456111979 | bayes_pls_golite062009 |
| transcription regulator activity | 0.883308266169681 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.431057665208185 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.430099678408149 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.427833022898625 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.35941349369351 | bayes_pls_golite062009 |
| DNA helicase activity | 0.280008381637593 | bayes_pls_golite062009 |
| protein binding | 0.267061490746095 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.170862363182338 | bayes_pls_golite062009 |
| chromatin binding | 0.154937729400031 | bayes_pls_golite062009 |
| nuclease activity | 0.126991239633667 | bayes_pls_golite062009 |
| transcription factor activity | 0.104696021012086 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.0394470752191727 | bayes_pls_golite062009 |
| single-stranded DNA specific exodeoxyribonuclease activity | 0.024241485627603 | bayes_pls_golite062009 |
|
Region A: Residues: [2097-2271] |
1 11 21 31 41 51
| | | | | |
1 VVLETMFTNR AGFFFEWVMR KSLLKYIKVK ECAAEAEFLD PGPSFILPNV ACSNCDAYRD 60
61 LDICRDPALL TEKEWSCADT QCGKIYDREQ MESSLLEMVR QRERMYHMQD VVCIRCNQVK 120
121 AAHLTEQCEC SGSFRCKESG SEFSKRMEIF MDIAKRQKFR LLEEYISWII YGPSY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
