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Protein Overview: CP31A_ARATH

General Information:
Name(s) found: CP31A_ARATH [Swiss-Prot]
Description(s) found:
Found 23 descriptions.
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  • 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 329 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    chloroplast envelope [IDA]
    thylakoid [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: innate immune response [IDA]
    RNA modification [IMP]
    RNA processing [TAS]
    Molecular Function: RNA binding [ISS][TAS]
    poly(U) RNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSIVTSSL KPLAMADSSS STIFSHPSIS STISSSRIRS SSVSLLTGRI NLPLSFSRVS  60
   61 LSLKTKTHLK KSPFVSFVAQ TSDWAEEGGE GSVAVEETEN SLESQDVSEG DESEGDASEG 120
  121 DVSEGDESEG DVSEGAVSER AEFPEPSEEA KLFVGNLAYD VNSQALAMLF EQAGTVEIAE 180
  181 VIYNRETDQS RGFGFVTMSS VDEAETAVEK FNRYDLNGRL LTVNKAAPRG SRPERAPRVY 240
  241 EPAFRVYVGN LPWDVDNGRL EQLFSEHGKV VEARVVYDRE TGRSRGFGFV TMSDVDELNE 300
  301 AISALDGQNL EGRAIRVNVA EERPPRRGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 6.30103 Solution structure of the second RNA binding domain from hypothetical protein BAB23448
    2 View Details [143..329] PSI-BLAST 43.30103 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.86761524461453 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.984778969024386 bayes_pls_golite062009
  • protein binding
    		•  0.426607329742248 bayes_pls_golite062009
  • RNA binding
    		•  0.0622892880461364 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.86761524461453 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.984778969024386 bayes_pls_golite062009
  • protein binding
    		•  0.426607329742248 bayes_pls_golite062009
  • RNA binding
    		•  0.0622892880461364 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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