| Protein: | CP31A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 329 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CP31A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
270.0 | [0..4] | [329..55] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MASSIVTSSL KPLAMADSSS STIFSHPSIS STISSSRIRS SSVSLLTGRI NLPLSFSRVS 60
61 LSLKTKTHLK KSPFVSFVAQ TSDWAEEGGE GSVAVEETEN SLESQDVSEG DESEGDASEG 120
121 DVSEGDESEG DVSEGAVSER AE
|
| Detection Method: |  |
| Confidence: | 6.30103 |
| Match: | 1whxA |
| Description: | Solution structure of the second RNA binding domain from hypothetical protein BAB23448 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.86761524461453 | bayes_pls_golite062009 |
| nucleic acid binding | 0.984778969024386 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
| RNA binding | 0.0622892880461364 | bayes_pls_golite062009 |
|
Region A: Residues: [143-329] |
1 11 21 31 41 51
| | | | | |
1 FPEPSEEAKL FVGNLAYDVN SQALAMLFEQ AGTVEIAEVI YNRETDQSRG FGFVTMSSVD 60
61 EAETAVEKFN RYDLNGRLLT VNKAAPRGSR PERAPRVYEP AFRVYVGNLP WDVDNGRLEQ 120
121 LFSEHGKVVE ARVVYDRETG RSRGFGFVTM SDVDELNEAI SALDGQNLEG RAIRVNVAEE 180
181 RPPRRGY
|
| Detection Method: | |
| Confidence: | 43.30103 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.86761524461453 | bayes_pls_golite062009 |
| nucleic acid binding | 0.984778969024386 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
| RNA binding | 0.0622892880461364 | bayes_pls_golite062009 |
