YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PABP3_ARATH

General Information:
Name(s) found: PABP3_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 660 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: mRNA processing [IGI]
    Molecular Function: translation initiation factor activity [ISS]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV  60
   61 TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN DAYRAMEALN YTPLFDRPIR 120
  121 IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF 180
  181 VQFEKEESAQ AAIDKLNGML MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI 240
  241 GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY 300
  301 VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS 360
  361 SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK PLYIALAQRK EDRRAHLQAL 420
  421 FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG 480
  481 PGNFIVPYPL QRQPQTGPRM GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM 540
  541 DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE 600
  601 RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD 660
  661

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..223] PSI-BLAST 53.221849 Poly(A)-binding protein
    2 View Details [224..316] PSI-BLAST 8.0 Solution structure of RRM domain in TAR DNA-binding protein-43
    3 View Details [317..415] FFAS03 4.46 No description for 2f3jA was found.
    4 View Details [416..524] deduced N/A No confident structure predictions are available.
    5 View Details [525..660] PSI-BLAST 30.39794 poly(A) binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  5.15097136329571 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • mRNA binding
    		•  4.05281507540116 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
    		• 2.60920363363072 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.18211199677674 bayes_pls_golite062009
  • DNA binding
    		•  1.98418556946403 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.36691748240059 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
    		•  1.07843408116687 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.06887262556449 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.824614388276642 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
    		•  0.597542453741953 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
    		•  0.38120065819101 bayes_pls_golite062009
  • structural molecule activity
    		•  0.352069985295889 bayes_pls_golite062009
  • hydrolase activity
    		•  0.153089401492248 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.128616879457381 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  5.15097136329571 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • mRNA binding
    		•  4.05281507540116 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
    		• 2.60920363363072 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.18211199677674 bayes_pls_golite062009
  • DNA binding
    		•  1.98418556946403 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.36691748240059 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
    		•  1.07843408116687 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.06887262556449 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.824614388276642 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
    		•  0.597542453741953 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
    		•  0.38120065819101 bayes_pls_golite062009
  • structural molecule activity
    		•  0.352069985295889 bayes_pls_golite062009
  • hydrolase activity
    		•  0.153089401492248 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.128616879457381 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • eukaryotic initiation factor 4G binding
    		•  5.42285329968544 bayes_pls_golite062009
  • RNA binding
    		•  4.11788426448287 bayes_pls_golite062009
  • mRNA binding
    		•  4.06818972936809 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.78909647605682 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  3.03728178586535 bayes_pls_golite062009
  • binding
    		•  2.76167454154417 bayes_pls_golite062009
  • poly(A) RNA binding
    		•  2.66269581586161 bayes_pls_golite062009
  • poly-purine tract binding
    		•  2.20136693536924 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.71649379151573 bayes_pls_golite062009
  • protein binding
    		•  0.856075580719879 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.773419219495254 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.4868428387769 bayes_pls_golite062009
  • ligase activity
    		•  0.38737123012383 bayes_pls_golite062009
  • catalytic activity
    		•  0.287695754348243 bayes_pls_golite062009
  • translation initiation factor binding
    		•  0.06484451210501 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.57

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle