| Protein: | PABP3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 660 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PABP3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
535.0 | [0..1] | [660..1] |
|
Region A: Residues: [1-223] |
1 11 21 31 41 51
| | | | | |
1 MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV 60
61 TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN DAYRAMEALN YTPLFDRPIR 120
121 IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF 180
181 VQFEKEESAQ AAIDKLNGML MNDKQVFVGH FIRRQERARD ENT
|
| Detection Method: |  |
| Confidence: | 53.221849 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.60920363363072 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| transcription repressor activity | 1.06887262556449 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 0.597542453741953 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| structural molecule activity | 0.352069985295889 | bayes_pls_golite062009 |
| hydrolase activity | 0.153089401492248 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [224-316] |
1 11 21 31 41 51
| | | | | |
1 PTPRFTNVYV KNLPKEIGED ELRKTFGKFG VISSAVVMRD QSGNSRCFGF VNFECTEAAA 60
61 SAVEKMNGIS LGDDVLYVGR AQKKSEREEE LRR
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1wf0A |
| Description: | Solution structure of RRM domain in TAR DNA-binding protein-43 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.60920363363072 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| transcription repressor activity | 1.06887262556449 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 0.597542453741953 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| structural molecule activity | 0.352069985295889 | bayes_pls_golite062009 |
| hydrolase activity | 0.153089401492248 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [317-415] |
1 11 21 31 41 51
| | | | | |
1 KFEQERINRF EKSQGANLYL KNLDDSVDDE KLKEMFSEYG NVTSSKVMLN PQGMSRGFGF 60
61 VAYSNPEEAL RALSEMNGKM IGRKPLYIAL AQRKEDRRA
|
| Detection Method: | |
| Confidence: | 4.46 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [416-524] |
1 11 21 31 41 51
| | | | | |
1 HLQALFSQIR APGPMSGFHH PPGGPMPGPP QHMYVGQNGA SMVPSQPIGY GFQPQFMPGM 60
61 RPGSGPGNFI VPYPLQRQPQ TGPRMGFRRG ATNVQQHIQQ QQLMHRNPS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [525-660] |
1 11 21 31 41 51
| | | | | |
1 PGMRYMNGAS NGRNGMDSSV PQGILPPIIP LPIDASSISH QKAPLLPISK LTSSLASASP 60
61 ADRTRMLGEQ LYPLVERHEP LHVAKVTGML LEMDQAEILH LMESPEALKS KVSEALDVLR 120
121 LSVDPTDHDL GFSTTD
|
| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| eukaryotic initiation factor 4G binding | 5.42285329968544 | bayes_pls_golite062009 |
| RNA binding | 4.11788426448287 | bayes_pls_golite062009 |
| mRNA binding | 4.06818972936809 | bayes_pls_golite062009 |
| nucleic acid binding | 3.78909647605682 | bayes_pls_golite062009 |
| single-stranded RNA binding | 3.03728178586535 | bayes_pls_golite062009 |
| binding | 2.76167454154417 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.20136693536924 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.71649379151573 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.773419219495254 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.4868428387769 | bayes_pls_golite062009 |
| ligase activity | 0.38737123012383 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
| translation initiation factor binding | 0.06484451210501 | bayes_pls_golite062009 |
