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Protein Overview: GORK_ARATH

General Information:
Name(s) found: GORK_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 820 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: response to cold [IEP]
    response to abscisic acid stimulus [IEP]
    response to jasmonic acid stimulus [IMP]
    response to water deprivation [IEP]
    Molecular Function: protein binding [IPI]
    outward rectifier potassium channel activity [IDA][IMP]
    cyclic nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLRRRQEI IDHEEEESND DVSSRRGKLS LAETFRWLDS SEHRRIETDG HNDYKYIIHP  60
   61 KNRWYKAWEM FILVWAIYSS LFTPMEFGFF RGLPERLFVL DIVGQIAFLV DIVLQFFVAY 120
  121 RDTQTYRTVY KPTRIAFRYL KSHFLMDFIG CFPWDLIYKA SGKHELVRYL LWIRLFRVRK 180
  181 VVEFFQRLEK DTRINYLFTR ILKLLFVEVY CTHTAACIFY YLATTLPPEN EGYTWIGSLK 240
  241 LGDYSYENFR EIDLWKRYTT ALYFAIVTMA TVGYGDIHAV NLREMIFVMI YVSFDMVLGA 300
  301 YLIGNITALI VKGSNTERFR DKMNDLISFM NRKKLGRDLR SQITGHVRLQ YDSHYTDTVM 360
  361 LQDIPASIRA KIAQLLYLPY IKKVPLFKGC STEFINQIVI RLHEEYFLPG EVITEQGNVV 420
  421 DHLYFVCEGL LEALVTKTDG SEESVTLLGP HTSFGDISII CNISQPFTVR VCELCHLLRL 480
  481 DKQSFSNILE IYFHDGRTIL NNIMEEKESN DRIKKLESDI VIHIGKQEAE LALKVNSAAF 540
  541 QGDFYQLKSL IRSGADPNKT DYDGRSPLHL AACRGYEDIT LFLIQEGVDV NLKDKFGHTP 600
  601 LFEAVKAGQE GVIGLLVKEG ASFNLEDSGN FLCTTVAKGD SDFLKRLLSS GMNPNSEDYD 660
  661 HRTPLHVAAS EGLFLMAKML VEAGASVISK DRWGNSPLDE ARLCGNKKLI KLLEDVKNAQ 720
  721 SSIYPSSLRE LQEERIERRK CTVFPFHPQE AKEERSRKHG VVVWIPSNLE KLIVTAAKEL 780
  781 GLSDGASFVL LSEDQGRITD IDMISDGHKL YMISDTTDQT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..335] PSI-BLAST 50.39794 Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
    2 View Details [336..438] PSI-BLAST 5.154902 Potassium channel-related protein MthK
    3 View Details [439..820] PSI-BLAST 79.69897 Ankyrin-R

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • channel activity
    		•  5.48302320131762 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  5.48302320131762 bayes_pls_golite062009
  • ion channel activity
    		•  5.45191380702272 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  5.32429478760195 bayes_pls_golite062009
  • cation channel activity
    		•  4.9952704304344 bayes_pls_golite062009
  • gated channel activity
    		•  4.93950448889788 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  3.96447578834323 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  2.98642849222395 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  2.98642849222395 bayes_pls_golite062009
  • calcium channel activity
    		•  2.30199174474136 bayes_pls_golite062009
  • protein binding
    		•  1.6716587413544 bayes_pls_golite062009
  • binding
    		•  1.53250538643043 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.21219115228238 bayes_pls_golite062009
  • receptor activity
    		•  0.415279977682022 bayes_pls_golite062009
  • signal transducer activity
    		•  0.143078152901993 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.143078152901993 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.124764997485166 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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