| Protein: | GORK_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 820 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GORK_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
547.0 | [0..1] | [820..1] |
|
Region A: Residues: [1-335] |
1 11 21 31 41 51
| | | | | |
1 MGRLRRRQEI IDHEEEESND DVSSRRGKLS LAETFRWLDS SEHRRIETDG HNDYKYIIHP 60
61 KNRWYKAWEM FILVWAIYSS LFTPMEFGFF RGLPERLFVL DIVGQIAFLV DIVLQFFVAY 120
121 RDTQTYRTVY KPTRIAFRYL KSHFLMDFIG CFPWDLIYKA SGKHELVRYL LWIRLFRVRK 180
181 VVEFFQRLEK DTRINYLFTR ILKLLFVEVY CTHTAACIFY YLATTLPPEN EGYTWIGSLK 240
241 LGDYSYENFR EIDLWKRYTT ALYFAIVTMA TVGYGDIHAV NLREMIFVMI YVSFDMVLGA 300
301 YLIGNITALI VKGSNTERFR DKMNDLISFM NRKKL
|
| Detection Method: |  |
| Confidence: | 50.39794 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [336-438] |
1 11 21 31 41 51
| | | | | |
1 GRDLRSQITG HVRLQYDSHY TDTVMLQDIP ASIRAKIAQL LYLPYIKKVP LFKGCSTEFI 60
61 NQIVIRLHEE YFLPGEVITE QGNVVDHLYF VCEGLLEALV TKT
|
| Detection Method: | |
| Confidence: | 5.154902 |
| Match: | 1lnqA |
| Description: | Potassium channel-related protein MthK |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [439-820] |
1 11 21 31 41 51
| | | | | |
1 DGSEESVTLL GPHTSFGDIS IICNISQPFT VRVCELCHLL RLDKQSFSNI LEIYFHDGRT 60
61 ILNNIMEEKE SNDRIKKLES DIVIHIGKQE AELALKVNSA AFQGDFYQLK SLIRSGADPN 120
121 KTDYDGRSPL HLAACRGYED ITLFLIQEGV DVNLKDKFGH TPLFEAVKAG QEGVIGLLVK 180
181 EGASFNLEDS GNFLCTTVAK GDSDFLKRLL SSGMNPNSED YDHRTPLHVA ASEGLFLMAK 240
241 MLVEAGASVI SKDRWGNSPL DEARLCGNKK LIKLLEDVKN AQSSIYPSSL RELQEERIER 300
301 RKCTVFPFHP QEAKEERSRK HGVVVWIPSN LEKLIVTAAK ELGLSDGASF VLLSEDQGRI 360
361 TDIDMISDGH KLYMISDTTD QT
|
| Detection Method: | |
| Confidence: | 79.69897 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| channel activity | 5.48302320131762 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 5.48302320131762 | bayes_pls_golite062009 |
| ion channel activity | 5.45191380702272 | bayes_pls_golite062009 |
| substrate-specific channel activity | 5.32429478760195 | bayes_pls_golite062009 |
| cation channel activity | 4.9952704304344 | bayes_pls_golite062009 |
| gated channel activity | 4.93950448889788 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 3.96447578834323 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 2.98642849222395 | bayes_pls_golite062009 |
| ligand-gated channel activity | 2.98642849222395 | bayes_pls_golite062009 |
| calcium channel activity | 2.30199174474136 | bayes_pls_golite062009 |
| protein binding | 1.6716587413544 | bayes_pls_golite062009 |
| binding | 1.53250538643043 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.21219115228238 | bayes_pls_golite062009 |
| receptor activity | 0.415279977682022 | bayes_pls_golite062009 |
| signal transducer activity | 0.143078152901993 | bayes_pls_golite062009 |
| molecular transducer activity | 0.143078152901993 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.124764997485166 | bayes_pls_golite062009 |
