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Protein Overview: G3PB_ARATH

General Information:
Name(s) found: G3PB_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||C96497 glyceraldehyde-3-phosphate dehydrogenase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|25090331|gb|AAN72278.1| At1g42970/F13A11_3 [Arabidopsis thaliana] [NCBI NR]
  • gi|22655284|gb|AAM98232.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20465256|gb|AAM19948.1| At1g42970/F13A11_3 [Arabidopsis thaliana] [NCBI NR]
  • gi|20455491|sp|P25857.2|G3PB_ARATH RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic; AltName: Full=NADP-dependent glyceraldehydephosphate dehydrogenase subunit B; Flags: Precursor [NCBI NR]
  • gi|19310805|gb|AAL85133.1| putative glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • gi|166708|gb|AAA32795.1| glyceraldehyde-3-phosphate dehydrogenase [NCBI NR]
  • gi|15217555|ref|NP_174996.1| GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • gi|14532674|gb|AAK64065.1| putative glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • gi|14517408|gb|AAK62594.1| At1g42970/F13A11_3 [Arabidopsis thaliana] [NCBI NR]
  • gi|12323057|gb|AAG51517.1|AC068324_5 glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • gi|110740441|dbj|BAF02115.1| putative glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2 [Swiss-Prot]
  • (P25857) Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) [athaliana3702.FASTAC.txt]
  • putative glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana]gi|14532674|gb|AAK64065.1| putative glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana]gi|22655284|gb|AAM98232.1| unknown protein [Arabidopsis thaliana]gi|20465256|gb|A [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase | chr1:16129992-16132024 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g42970/F13A11_3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glyceraldehyde-3-phosphate dehydrogenase [nr-271106-contam.fasta]
  • Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) [nr-271106-contam.fasta]
  • | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 447 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA][ISS]
    stromule [IDA]
    membrane [IDA]
    apoplast [IDA]
    chloroplast envelope [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: response to cold [IEP]
    glycolysis [ISS]
    reductive pentose-phosphate cycle [NAS]
    response to cadmium ion [IEP]
    response to light stimulus [IEP]
    response to sucrose stimulus [IEP]
    Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity [ISS]
    glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA  60
   61 AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW HGRKDSPLEV VVLNDSGGVK 120
  121 NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG 180
  181 VFVDGPGAGK HIQAGASKVI ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL 240
  241 APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS 300
  301 LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC 360
  361 DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE WGYSQRVVDL AHLVASKWPG 420
  421 AEAVGSGDPL EDFCKTNPAD EECKVYD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..447] PSI-BLAST 120.0 No description for 2pkqO was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glyceraldehyde-3-phosphate dehydrogenase activity
    		•  6.40381118887682 bayes_pls_golite062009
  • glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
    		•  5.96956214078036 bayes_pls_golite062009
  • oxidoreductase activity
    		•  4.00402564572912 bayes_pls_golite062009
  • 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
    		•  3.16750187025282 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  2.70673476015931 bayes_pls_golite062009
  • catalytic activity
    		•  2.54843319568228 bayes_pls_golite062009
  • glucose-6-phosphate dehydrogenase activity
    		•  2.2713146106379 bayes_pls_golite062009
  • inositol-3-phosphate synthase activity
    		•  2.2178883592085 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.90939908578582 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  1.66955978224275 bayes_pls_golite062009
  • DNA binding
    		•  1.61355789916908 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.48478425318425 bayes_pls_golite062009
  • hydrolase activity
    		•  1.40468563568607 bayes_pls_golite062009
  • binding
    		•  1.22114607236074 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  1.16811519855038 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.11682034462164 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.03017667696669 bayes_pls_golite062009
  • transcription factor activity
    		•  0.91090893050278 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.910536752370264 bayes_pls_golite062009
  • signal transducer activity
    		•  0.910536752370264 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  0.88293430762998 bayes_pls_golite062009
  • NAD or NADH binding
    		•  0.74536049628503 bayes_pls_golite062009
  • intramolecular lyase activity
    		•  0.708206800759221 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.527946013169731 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  0.41382905800454 bayes_pls_golite062009
  • receptor activity
    		•  0.388215697182664 bayes_pls_golite062009
  • structural molecule activity
    		•  0.345975336806588 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  0.331048046502169 bayes_pls_golite062009
  • collagen binding
    		•  0.30621400535957 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.211380641599388 bayes_pls_golite062009
  • NADPH:quinone reductase activity
    		•  0.136079082491021 bayes_pls_golite062009
  • glucose binding
    		•  0.13030486887358 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle