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Protein Overview: CLCD_ARATH

General Information:
Name(s) found: CLCD_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|41688458|sp|P92943.2|CLCD_ARATH RecName: Full=Chloride channel protein CLC-d; Short=AtCLC-d [NCBI NR]
  • gi|15240276|ref|NP_197996.1| CLC-D (CHLORIDE CHANNEL D); anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] [NCBI NR]
  • Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2 [Swiss-Prot]
  • (P92943) Chloride channel protein CLC-d (AtCLC-d) [athaliana3702.FASTAC.txt]
  • Chloride channel protein CLC-d (AtCLC-d)gi|15240276|ref|NP_197996.1| chloride channel protein (CLC-d) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Chloride channel protein CLC-d [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATCLC-D, CLC-D | CLC-D (chloride channel D); anion channel/ voltage-gated chloride channel | chr5:9189625-9194350 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • CLC-D; anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Chloride channel protein CLC-d (AtCLC-d) [nr-271106-contam.fasta]
  • | Symbols: CLC-D, ATCLC-D | chloride channel D | chr5:9189622-9194347 FORWARD LENGTH=792 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 792 amino acids

    Gene Ontology:
    Cellular Component: trans-Golgi network [IDA]
    intracellular [IC]
    Biological Process: unidimensional cell growth [IMP]
    response to metal ion [IGI]
    [NOT]cellular anion homeostasis [IMP]
    Molecular Function: anion channel activity [ISS]
    voltage-gated chloride channel activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE  60
   61 QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN FAGWKFALTF AIIQKSYFAG 120
  121 FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI 180
  181 GSVGGGLALG KEGPLVHTGA CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA 240
  241 GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG 300
  301 GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK 360
  361 IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR PPGMYGNYVN FFCKTDNEYN 420
  421 DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM 480
  481 IGSTYGRLVG MFVVRFYKKL NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL 540
  541 PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP 600
  601 RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD 660
  661 PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL APFLNPSPYV VPEDMSLTKV 720
  721 YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM 780
  781 DAARPLLDDL LG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..601] PSI-BLAST 56.30103 Clc chloride channel
    2 View Details [602..792] PSI-BLAST 17.69897 No description for 2cu0A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • anion channel activity
    		•  6.77290758049983 bayes_pls_golite062009
  • chloride channel activity
    		•  6.77290758049983 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  6.08111514985329 bayes_pls_golite062009
  • voltage-gated chloride channel activity
    		•  5.99544422864122 bayes_pls_golite062009
  • voltage-gated anion channel activity
    		•  5.99544422864122 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  5.07840957725271 bayes_pls_golite062009
  • ion channel activity
    		•  4.93164650815682 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  4.81149777353187 bayes_pls_golite062009
  • channel activity
    		•  4.78965126968592 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  4.78965126968592 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  4.67227438984104 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  4.27956097534048 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  4.255638017629 bayes_pls_golite062009
  • gated channel activity
    		•  4.1072949331811 bayes_pls_golite062009
  • transporter activity
    		•  2.94995161862691 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.84443650880263 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.82470397063503 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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