YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCD_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.88
Transmembrane Helix	73	94	0.91
Non-Cytoplasmic	95	116	0.76
Transmembrane Helix	117	140	0.85
Cytoplasmic	141	166	0.73
Transmembrane Helix	167	189	0.70
Non-Cytoplasmic	190	194	0.72
Transmembrane Helix	195	216	0.78
Cytoplasmic	217	232	0.93
Transmembrane Helix	233	256	0.82
Non-Cytoplasmic	257	266	0.77
Transmembrane Helix	267	286	0.86
Cytoplasmic	287	292	0.57
Transmembrane Helix	293	309	0.80
Non-Cytoplasmic	310	319	0.85
Transmembrane Helix	320	343	0.88
Cytoplasmic	344	449	0.88
Transmembrane Helix	450	470	0.89
Non-Cytoplasmic	471	475	0.65
Transmembrane Helix	476	497	0.72
Cytoplasmic	498	506	0.73
Transmembrane Helix	507	531	0.80
Non-Cytoplasmic	532	792	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE  60
   61 QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN FAGWKFALTF AIIQKSYFAG 120
  121 FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI 180
  181 GSVGGGLALG KEGPLVHTGA CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA 240
  241 GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG 300
  301 GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK 360
  361 IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR PPGMYGNYVN FFCKTDNEYN 420
  421 DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM 480
  481 IGSTYGRLVG MFVVRFYKKL NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL 540
  541 PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP 600
  601 RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD 660
  661 PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL APFLNPSPYV VPEDMSLTKV 720
  721 YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM 780
  781 DAARPLLDDL LG