| Protein: | CLCD_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 792 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLCD_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
490.0 | [0..1] | [792..1] |
|
Region A: Residues: [1-601] |
1 11 21 31 41 51
| | | | | |
1 MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE 60
61 QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN FAGWKFALTF AIIQKSYFAG 120
121 FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI 180
181 GSVGGGLALG KEGPLVHTGA CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA 240
241 GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG 300
301 GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK 360
361 IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR PPGMYGNYVN FFCKTDNEYN 420
421 DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM 480
481 IGSTYGRLVG MFVVRFYKKL NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL 540
541 PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP 600
601 R
|
| Detection Method: |  |
| Confidence: | 56.30103 |
| Match: | 1kplA |
| Description: | Clc chloride channel |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| anion channel activity | 6.77290758049983 | bayes_pls_golite062009 |
| chloride channel activity | 6.77290758049983 | bayes_pls_golite062009 |
| anion transmembrane transporter activity | 6.08111514985329 | bayes_pls_golite062009 |
| voltage-gated chloride channel activity | 5.99544422864122 | bayes_pls_golite062009 |
| voltage-gated anion channel activity | 5.99544422864122 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 5.07840957725271 | bayes_pls_golite062009 |
| ion channel activity | 4.93164650815682 | bayes_pls_golite062009 |
| substrate-specific channel activity | 4.81149777353187 | bayes_pls_golite062009 |
| channel activity | 4.78965126968592 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 4.78965126968592 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 4.67227438984104 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 4.27956097534048 | bayes_pls_golite062009 |
| voltage-gated channel activity | 4.255638017629 | bayes_pls_golite062009 |
| gated channel activity | 4.1072949331811 | bayes_pls_golite062009 |
| transporter activity | 2.94995161862691 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.84443650880263 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.82470397063503 | bayes_pls_golite062009 |
|
Region A: Residues: [602-792] |
1 11 21 31 41 51
| | | | | |
1 VIRVADVASI LGSNKHNGFP VIDHTRSGET LVIGLVLRSH LLVLLQSKVD FQHSPLPCDP 60
61 SARNIRHSFS EFAKPVSSKG LCIEDIHLTS DDLEMYIDLA PFLNPSPYVV PEDMSLTKVY 120
121 NLFRQLGLRH LFVVPRPSRV IGLITRKDLL IEENGESSAV ELQQSTSVRG RYSETATRMD 180
181 AARPLLDDLL G
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 2cu0A |
| Description: | No description for 2cu0A was found. |
