YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE30527

General Information:
Name(s) found: CE30527 [WormBase]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • WBGene00018006 locus:hpo-3 status:Partially_confirmed UniProt:Q95X60 protein_id:CCD66443.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 676 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    GPI-anchor transamidase complex [IEALink to PubMed article]
    Biological Process: tRNA processing [IEALink to PubMed article]
    Molecular Function: pseudouridylate synthase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLLKFTNK KLKLLEMALE ISKDGGTTRP KILDKILKFR KVALIIAYIG AYLSAQWLFD  60
   61 PVNMEVTRIS EHSLMPGLVT PKFDKSGIAI QLYRRFSDLP KSKSQQELIH TIFSDLGLEC 120
  121 FTHKWRSKVA GNPMNGENVY GFIRGPRNDG AEAQMIVVQL GRSEKSRRMM SRMLAFVDYA 180
  181 KDQVYWARDI VIVFVDGGEK NDSIEKAAFA LDAFLLKYQK IEALNSKKSI TVEADEIQAQ 240
  241 TGALIGGVVY DLSGMAVKGQ HIVNIQTNGL NGQQVNLDVF NGITKIADSK HHSRVAIFGT 300
  301 LHRHSNPYME YSPFIVPMRA LYTQAFISIE GIHSVLGKYG VQGLTVGLSH DYSEKQTGQF 360
  361 IEEVSRMLNN VLERLHQSYF MYVLADDLHF SSIAMYIIPL TILVSPLVIS AYFEWTKIQE 420
  421 FQFPVVHLAF HVLGFFYYIA TTYVFQTIGT TFVLQWMQWP FVGIDGCDGQ FTPSWSLINS 480
  481 FLIFFMIPLG PYVFLKEPVR CVPSMRIVCL LETSLVLYGI CLTNFGLAIL CTAFVVPIVF 540
  541 LMTYESSDRT RSIFRSSVLA ILNPISVLAF VAINIPGMFG QLFPTISQDS WLAAAQSIAL 600
  601 TAIREDVEFK VNHFFLLCCF GYPIWNMLFA CSMRYGPEPQ GSLGIFGNGS DDDDGDDDDG 660
  661 PQKTNRGHST KKNKRE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..411] FFAS03 2.03 The 0.95 Angstrom Resolution Crystal Structure of the Aminopeptidase from Aeromonas proteolytica
    2 View Details [412..456] deduced N/A No confident structure predictions are available.
    3 View Details [457..676] MSA 6.243996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.30073863026596 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  1.04545175523841 bayes_pls_golite062009
  • peptidase activity
    		•  0.700635398774672 bayes_pls_golite062009
  • binding
    		•  0.374473226792137 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.362145256746391 bayes_pls_golite062009
  • protein binding
    		•  0.192842853386021 bayes_pls_golite062009
  • metallopeptidase activity
    		•  0.177551285129758 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.171364523459 bayes_pls_golite062009
  • hydrolase activity
    		•  0.091850616360333 bayes_pls_golite062009
  • DNA binding
    		•  0.0535456396545306 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle