YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30527
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLLKFTNK KLKLLEMALE ISKDGGTTRP KILDKILKFR KVALIIAYIG AYLSAQWLFD  60
   61 PVNMEVTRIS EHSLMPGLVT PKFDKSGIAI QLYRRFSDLP KSKSQQELIH TIFSDLGLEC 120
  121 FTHKWRSKVA GNPMNGENVY GFIRGPRNDG AEAQMIVVQL GRSEKSRRMM SRMLAFVDYA 180
  181 KDQVYWARDI VIVFVDGGEK NDSIEKAAFA LDAFLLKYQK IEALNSKKSI TVEADEIQAQ 240
  241 TGALIGGVVY DLSGMAVKGQ HIVNIQTNGL NGQQVNLDVF NGITKIADSK HHSRVAIFGT 300
  301 LHRHSNPYME YSPFIVPMRA LYTQAFISIE GIHSVLGKYG VQGLTVGLSH DYSEKQTGQF 360
  361 IEEVSRMLNN VLERLHQSYF MYVLADDLHF SSIAMYIIPL TILVSPLVIS AYFEWTKIQE 420
  421 FQFPVVHLAF HVLGFFYYIA TTYVFQTIGT TFVLQWMQWP FVGIDGCDGQ FTPSWSLINS 480
  481 FLIFFMIPLG PYVFLKEPVR CVPSMRIVCL LETSLVLYGI CLTNFGLAIL CTAFVVPIVF 540
  541 LMTYESSDRT RSIFRSSVLA ILNPISVLAF VAINIPGMFG QLFPTISQDS WLAAAQSIAL 600
  601 TAIREDVEFK VNHFFLLCCF GYPIWNMLFA CSMRYGPEPQ GSLGIFGNGS DDDDGDDDDG 660
  661 PQKTNRGHST KKNKRE

Type	Start	End	Confidence
Cytoplasmic	1	38	0.65
Transmembrane Helix	39	59	0.52
Non-Cytoplasmic	60	392	0.90
Transmembrane Helix	393	413	0.93
Cytoplasmic	414	427	0.78
Transmembrane Helix	428	454	0.78
Non-Cytoplasmic	455	474	0.83
Transmembrane Helix	475	495	0.92
Cytoplasmic	496	501	0.87
Transmembrane Helix	502	522	0.67
Non-Cytoplasmic	523	524	0.55
Transmembrane Helix	525	544	0.86
Cytoplasmic	545	556	0.55
Transmembrane Helix	557	580	0.82
Non-Cytoplasmic	581	610	0.54
Transmembrane Helix	611	632	0.67
Cytoplasmic	633	676	0.54