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Protein Overview: CE27852

General Information:
Name(s) found: CE27852 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00016657 status:Confirmed UniProt:Q18621 protein_id:CCD67332.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 351 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: lysine biosynthetic process [IEALink to PubMed article]
    arginine biosynthetic process [IEALink to PubMed article]
    lysine biosynthetic process via diaminopimelate [IEALink to PubMed article]
    proteolysis [IEALink to PubMed article]
    cellular amino acid metabolic process [IEALink to PubMed article]
    Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    metal ion binding [IEALink to PubMed article]
    dipeptidase activity [IEALink to PubMed article]
    protein dimerization activity [IEALink to PubMed article]
    succinyl-diaminopimelate desuccinylase activity [IEALink to PubMed article]
    aminoacylase activity [IEALink to PubMed article]
    acetylornithine deacetylase activity [IEALink to PubMed article]
    metallopeptidase activity [IEALink to PubMed article]
    cobalt ion binding [IEALink to PubMed article]
    hydrolase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKWEVEVE KRLLEYMSHS STTGNEAAFA DVVAKDLEEN GWTVYKQSIP NSDRYNIYAT  60
   61 FRNSDPKHVK VLLNTHLDTV PPYFPPTQDE QNIYGNGSND AKGQLAAMVT AATIISKTDE 120
  121 DVARALGLLF VVGEEFDHIG MIEANKLEIL PEYLLVGEPT ELKFGTIQKG ALKVKLTVTG 180
  181 QAGHSGYPNS GSSAIHKMIE VLHDVQLAKW PCDATNGATT YNIGKISGGQ ALNAWAANCE 240
  241 ADIFFRVVTS VKDIQNQLLA LVNGRAEVSL LSFNDPVILD VPPIEAELDH VSFNTDIAYF 300
  301 DARDKVKAKY LFGGGSIKNA HSKNEFIPKD ELHKCTATLV KLVNHLYLEH Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..351] PSI-BLAST 65.69897 Crystal structure of succinyl diaminopimelate desuccinylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.3710874246093 bayes_pls_golite062009
  • succinyl-diaminopimelate desuccinylase activity
    		•  0.851637991746991 bayes_pls_golite062009
  • hydrolase activity
    		•  0.233942084536258 bayes_pls_golite062009
  • N-formylglutamate deformylase activity
    		•  0.17769913093601 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.0926675628351197 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle