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View Structure Prediction Details

Protein: CE27852
Organism: Caenorhabditis elegans
Length: 351 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27852.

Description E-value Query
Range
Subject
Range
gi|17134072, gi|... - gi|17232426|ref|NP_488974.1| N-acyl-L-amino acid amidohydrolase [Nostoc sp. PCC 7120], gi|17134072|d...
gi|25319559 - pir||AF2422 N-acyl-L-amino acid amidohydrolase [imported] - Nostoc sp. (strain PCC 7120)
271.0 [0..4] [349..22]

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Predicted Domain #1
Region A:
Residues: [1-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKWEVEVE KRLLEYMSHS STTGNEAAFA DVVAKDLEEN GWTVYKQSIP NSDRYNIYAT  60
   61 FRNSDPKHVK VLLNTHLDTV PPYFPPTQDE QNIYGNGSND AKGQLAAMVT AATIISKTDE 120
  121 DVARALGLLF VVGEEFDHIG MIEANKLEIL PEYLLVGEPT ELKFGTIQKG ALKVKLTVTG 180
  181 QAGHSGYPNS GSSAIHKMIE VLHDVQLAKW PCDATNGATT YNIGKISGGQ ALNAWAANCE 240
  241 ADIFFRVVTS VKDIQNQLLA LVNGRAEVSL LSFNDPVILD VPPIEAELDH VSFNTDIAYF 300
  301 DARDKVKAKY LFGGGSIKNA HSKNEFIPKD ELHKCTATLV KLVNHLYLEH Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 1vgyA
Description: Crystal structure of succinyl diaminopimelate desuccinylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.3710874246093 bayes_pls_golite062009
succinyl-diaminopimelate desuccinylase activity 0.851637991746991 bayes_pls_golite062009
hydrolase activity 0.233942084536258 bayes_pls_golite062009
N-formylglutamate deformylase activity 0.17769913093601 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0.0926675628351197 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle