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Protein Overview: rpn-10

General Information:
Name(s) found: rpn-10 / CE26355 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00004466 locus:rpn-10 status:Confirmed UniProt:O61742 protein_id:CCD61298.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: spermatogenesis [IGILink to PubMed article][IMPLink to PubMed article]
    ubiquitin-dependent protein catabolic process [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQESTMICV DNSEYMRNGD FQPTRLQSQQ DAVNLVTQCK LRANPENAVG ILSMANSVQV  60
   61 LSSLSTEQGR LMMKNHSIEP FGKCNFIAGI KIAHLALKHR QNRNHKMRVV LFIGSPLEEI 120
  121 EMNELVKIAK KMKKEKVLCD VIMFGENESD GHEKFSTFVD TLNGKEGSGS SLIVVPQGSS 180
  181 LTDALLQSSV CKNEDGQAAF GGGGNGMDNA FGMDVENDPD LALALRVSME EERARQAAAA 240
  241 AANGGAADSG ADAEVAAAAA AVPLEEMDMG AMTEEQQLEW ALRLSMQENA PAEQPQVQHE 300
  301 QMDVDGAPAV GGDNLDDLMN NPELLQQIVD DLPAANAEKD DDKEKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] PSI-BLAST 21.0 Integrin alpha-x beta2
    2 View Details [192..346] PSI-BLAST 13.69897 Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  4.02098822555334 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.82496592594463 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.72596563304893 bayes_pls_golite062009
  • binding
    		•  3.32950434867692 bayes_pls_golite062009
  • hydrolase activity
    		•  2.72944528058473 bayes_pls_golite062009
  • protein binding
    		•  1.4332924081006 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.41389987484225 bayes_pls_golite062009
  • DNA binding
    		•  1.27751137443334 bayes_pls_golite062009
  • transporter activity
    		•  0.778626141603949 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.45109468643752 bayes_pls_golite062009
  • enzyme binding
    		•  0.39062208299171 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0661625326929309 bayes_pls_golite062009
  • protein complex binding
    		•  0.0341925447010603 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.027305897174472 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0179622467180781 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0153681945260867 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle