| Protein: | rpn-10 |
| Organism: | Caenorhabditis elegans |
| Length: | 346 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpn-10.
| Description | E-value | Query Range |
Subject Range |
|
|
333.0 | [0..10] | [343..523] |
|
Region A: Residues: [1-191] |
1 11 21 31 41 51
| | | | | |
1 MVQESTMICV DNSEYMRNGD FQPTRLQSQQ DAVNLVTQCK LRANPENAVG ILSMANSVQV 60
61 LSSLSTEQGR LMMKNHSIEP FGKCNFIAGI KIAHLALKHR QNRNHKMRVV LFIGSPLEEI 120
121 EMNELVKIAK KMKKEKVLCD VIMFGENESD GHEKFSTFVD TLNGKEGSGS SLIVVPQGSS 180
181 LTDALLQSSV C
|
| Detection Method: |  |
| Confidence: | 21.0 |
| Match: | 1n3yA |
| Description: | Integrin alpha-x beta2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.02098822555334 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.82496592594463 | bayes_pls_golite062009 |
| endopeptidase activity | 3.72596563304893 | bayes_pls_golite062009 |
| binding | 3.32950434867692 | bayes_pls_golite062009 |
| hydrolase activity | 2.72944528058473 | bayes_pls_golite062009 |
| protein binding | 1.4332924081006 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41389987484225 | bayes_pls_golite062009 |
| DNA binding | 1.27751137443334 | bayes_pls_golite062009 |
| transporter activity | 0.778626141603949 | bayes_pls_golite062009 |
| protein dimerization activity | 0.45109468643752 | bayes_pls_golite062009 |
| enzyme binding | 0.39062208299171 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0661625326929309 | bayes_pls_golite062009 |
| protein complex binding | 0.0341925447010603 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.027305897174472 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0179622467180781 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0153681945260867 | bayes_pls_golite062009 |
|
Region A: Residues: [192-346] |
1 11 21 31 41 51
| | | | | |
1 KNEDGQAAFG GGGNGMDNAF GMDVENDPDL ALALRVSMEE ERARQAAAAA ANGGAADSGA 60
61 DAEVAAAAAA VPLEEMDMGA MTEEQQLEWA LRLSMQENAP AEQPQVQHEQ MDVDGAPAVG 120
121 GDNLDDLMNN PELLQQIVDD LPAANAEKDD DKEKK
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1yx4A |
| Description: | Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition |
Matching Structure (courtesy of the PDB): |
|
