YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: npp-17

General Information:
Name(s) found: npp-17 / CE09338 [WormBase]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • WBGene00003803 locus:rae-1 Nucleoporin-17 status:Partially_confirmed UniProt:Q93454 protein_id:CAB02280.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 373 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: negative regulation of locomotion [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGSSGFGNK SMFGGSNIST STTTPAANTT QNDDFLVDGA PEDTIQVIKF SPTPQDKPML  60
   61 ACGSWDGTIR VWMFNDANTF EGKAQQNIPA PILDIAWIED SSKIFIACAD KEARLWDLAS 120
  121 NQVAVVGTHD GPVKTCHWIN GNNYQCLMTG SFDKTLRFWD MKNLPNQTQM AQIQLPERVY 180
  181 AADVLYPMAV VALANKHIKV YNLENGPTEV KDIESQLKFQ IRCISIFKDK SNQNPAGFAL 240
  241 GSIEGRVAVQ YVDVANPKDN FTFKCHRSAE LVNGFQEIYA VNDICFHPQH GTLVTIGSDG 300
  301 RYSMWDKDAR TKLKTSEPHP MPLTCCDVHS SGAFLVYALG YDWSRGHEGN TQPGSKIVIH 360
  361 KCIEDMKPRP TKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..373] PSI-BLAST 74.39794 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytoskeletal protein binding
    		•  3.1056443224755 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • actin binding
    		•  2.27900251096697 bayes_pls_golite062009
  • tubulin binding
    		•  2.01759734664395 bayes_pls_golite062009
  • microtubule binding
    		•  1.98090681825586 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.95667720244696 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.90457914882449 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.6725482369574 bayes_pls_golite062009
  • snoRNA binding
    		•  1.61553185503007 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.59258100795958 bayes_pls_golite062009
  • structural molecule activity
    		•  1.47448876401574 bayes_pls_golite062009
  • DNA binding
    		•  1.38475369554616 bayes_pls_golite062009
  • dynactin binding
    		•  1.29574819250251 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • transporter activity
    		•  1.21549336905926 bayes_pls_golite062009
  • protein transporter activity
    		•  0.964340340346761 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.963909191437161 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.937944931047515 bayes_pls_golite062009
  • dynein binding
    		•  0.92848877230786 bayes_pls_golite062009
  • transcription factor activity
    		•  0.804334981068351 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.734793983890004 bayes_pls_golite062009
  • signal transducer activity
    		•  0.577438981735303 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.577438981735303 bayes_pls_golite062009
  • actin filament binding
    		•  0.554537899540618 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.535041400676017 bayes_pls_golite062009
    		• 0.53274018413176 bayes_pls_golite062009
  • transcription factor binding
    		•  0.412844855996155 bayes_pls_golite062009
  • receptor activity
    		•  0.322599767074871 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.19391619547146 bayes_pls_golite062009
  • hydrolase activity
    		•  0.181211933860468 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.168317261786777 bayes_pls_golite062009
  • histone binding
    		•  0.166694897714113 bayes_pls_golite062009
  • kinase activity
    		•  0.127621956173205 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.118975415284669 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle