| Protein: | npp-17 |
| Organism: | Caenorhabditis elegans |
| Length: | 373 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-17.
| Description | E-value | Query Range |
Subject Range |
|
|
421.0 | [0..1] | [368..1168] |
|
Region A: Residues: [1-373] |
1 11 21 31 41 51
| | | | | |
1 MFGSSGFGNK SMFGGSNIST STTTPAANTT QNDDFLVDGA PEDTIQVIKF SPTPQDKPML 60
61 ACGSWDGTIR VWMFNDANTF EGKAQQNIPA PILDIAWIED SSKIFIACAD KEARLWDLAS 120
121 NQVAVVGTHD GPVKTCHWIN GNNYQCLMTG SFDKTLRFWD MKNLPNQTQM AQIQLPERVY 180
181 AADVLYPMAV VALANKHIKV YNLENGPTEV KDIESQLKFQ IRCISIFKDK SNQNPAGFAL 240
241 GSIEGRVAVQ YVDVANPKDN FTFKCHRSAE LVNGFQEIYA VNDICFHPQH GTLVTIGSDG 300
301 RYSMWDKDAR TKLKTSEPHP MPLTCCDVHS SGAFLVYALG YDWSRGHEGN TQPGSKIVIH 360
361 KCIEDMKPRP TKK
|
| Detection Method: |  |
| Confidence: | 74.39794 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| actin binding | 2.27900251096697 | bayes_pls_golite062009 |
| tubulin binding | 2.01759734664395 | bayes_pls_golite062009 |
| microtubule binding | 1.98090681825586 | bayes_pls_golite062009 |
| transcription regulator activity | 1.95667720244696 | bayes_pls_golite062009 |
| nucleic acid binding | 1.90457914882449 | bayes_pls_golite062009 |
| transcription repressor activity | 1.6725482369574 | bayes_pls_golite062009 |
| snoRNA binding | 1.61553185503007 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.59258100795958 | bayes_pls_golite062009 |
| structural molecule activity | 1.47448876401574 | bayes_pls_golite062009 |
| DNA binding | 1.38475369554616 | bayes_pls_golite062009 |
| dynactin binding | 1.29574819250251 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| protein transporter activity | 0.964340340346761 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.963909191437161 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.937944931047515 | bayes_pls_golite062009 |
| dynein binding | 0.92848877230786 | bayes_pls_golite062009 |
| transcription factor activity | 0.804334981068351 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| signal transducer activity | 0.577438981735303 | bayes_pls_golite062009 |
| molecular transducer activity | 0.577438981735303 | bayes_pls_golite062009 |
| actin filament binding | 0.554537899540618 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.535041400676017 | bayes_pls_golite062009 |
| 0.53274018413176 | bayes_pls_golite062009 | |
| transcription factor binding | 0.412844855996155 | bayes_pls_golite062009 |
| receptor activity | 0.322599767074871 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.19391619547146 | bayes_pls_golite062009 |
| hydrolase activity | 0.181211933860468 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.168317261786777 | bayes_pls_golite062009 |
| histone binding | 0.166694897714113 | bayes_pls_golite062009 |
| kinase activity | 0.127621956173205 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
