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Protein Overview: rpn-9

General Information:
Name(s) found: rpn-9 / CE02329 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00004465 locus:rpn-9 status:Confirmed UniProt:Q22253 protein_id:CAA88971.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 387 amino acids

    Gene Ontology:
    Cellular Component: proteasome regulatory particle [ISSLink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQDYLNGK LAAANGPLAD DWKNLKELWE KKLWHQLTVL TRSLVKKPQF VASTDMHEFY  60
   61 RLFVAEWELR VNPLQLVEIC ISIAQNIATK DKQKSMEFLS KIGNVINKDK IAVARLHTGE 120
  121 IEARLENKDK NGQIIDLKSI RTQIDSTQHE VDSLVGVTEV HAPFYRVSSL YLREVGDFAG 180
  181 YYREALRYLG VEDANNLTTE QKQVHAVLLG FAALLGENVH NFGELLAHPI LKSLEGTRER 240
  241 WIVDVLLAFN SGDLTRFFSL EGDWGGWDDL KKQKDFLTAK IRLMAVMELA VSRPTKARSV 300
  301 SFKEIATKCQ IPFDEVEFLV MKALSKDLIR GDINQVEQVV YVTWVQPRVL DNPQIMQMAT 360
  361 RISAWRNDVN SMEGIVSKEA REILTQN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..201] MSA 6.386993 View MSA. No confident structure predictions are available.
    2 View Details [202..267] MSA 1.444996 View MSA. No confident structure predictions are available.
    3 View Details [268..387] PSI-BLAST 9.045757 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.77201910025409 bayes_pls_golite062009
  • binding
    		•  3.52874320222492 bayes_pls_golite062009
  • DNA binding
    		•  3.44642410378325 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38144578566524 bayes_pls_golite062009
  • transcription factor activity
    		•  2.83460075788873 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30467124306022 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.08341148210578 bayes_pls_golite062009
  • transcription activator activity
    		•  1.98504395280033 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.16843113623321 bayes_pls_golite062009
  • protein binding
    		•  0.753698599635855 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.42135864069093 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.118016217031359 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle