| Protein: | rpn-9 |
| Organism: | Caenorhabditis elegans |
| Length: | 387 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpn-9.
| Description | E-value | Query Range |
Subject Range |
|
|
309.0 | [0..3] | [385..4] |
|
Region A: Residues: [1-201] |
1 11 21 31 41 51
| | | | | |
1 MTAQDYLNGK LAAANGPLAD DWKNLKELWE KKLWHQLTVL TRSLVKKPQF VASTDMHEFY 60
61 RLFVAEWELR VNPLQLVEIC ISIAQNIATK DKQKSMEFLS KIGNVINKDK IAVARLHTGE 120
121 IEARLENKDK NGQIIDLKSI RTQIDSTQHE VDSLVGVTEV HAPFYRVSSL YLREVGDFAG 180
181 YYREALRYLG VEDANNLTTE Q
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [202-267] |
1 11 21 31 41 51
| | | | | |
1 KQVHAVLLGF AALLGENVHN FGELLAHPIL KSLEGTRERW IVDVLLAFNS GDLTRFFSLE 60
61 GDWGGW
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [268-387] |
1 11 21 31 41 51
| | | | | |
1 DDLKKQKDFL TAKIRLMAVM ELAVSRPTKA RSVSFKEIAT KCQIPFDEVE FLVMKALSKD 60
61 LIRGDINQVE QVVYVTWVQP RVLDNPQIMQ MATRISAWRN DVNSMEGIVS KEAREILTQN 120
121
|
| Detection Method: | |
| Confidence: | 9.045757 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.77201910025409 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| DNA binding | 3.44642410378325 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| transcription factor activity | 2.83460075788873 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.08341148210578 | bayes_pls_golite062009 |
| transcription activator activity | 1.98504395280033 | bayes_pls_golite062009 |
| transcription repressor activity | 1.16843113623321 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
