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Protein Overview: pdl-1

General Information:
Name(s) found: pdl-1 / CE01175 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00003966 locus:pdl-1 Phosphodiesterase delta-like protein status:Partially_confirmed UniProt:Q18268 protein_id:CCD65884.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 159 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: visual perception [IEALink to PubMed article]
    Molecular Function: protein binding [IEALink to PubMed article]
    3',5'-cyclic-nucleotide phosphodiesterase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTATRHQD SKLSEKAESI LAGFKLNWMN LRDAETGKVL WQSTEDMADP KREHKAHVPK  60
   61 NLLKCRTVSR EINFTSSVKI EKFRLEQRVY LKGTIIEEWY FDFGFVIPDS TNTWQNMIEA 120
  121 APESQMFPPS VLSGNVVVET LFYDGDLLVS TSRVRLYYD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..159] PSI-BLAST 63.39794 GMP-PDE delta

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.21867595762264 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  1.5302582659987 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  1.5302582659987 bayes_pls_golite062009
  • protein binding
    		•  1.52579295917981 bayes_pls_golite062009
  • gated channel activity
    		•  1.42896395862304 bayes_pls_golite062009
  • cation channel activity
    		•  1.4256218398774 bayes_pls_golite062009
  • ion channel activity
    		•  1.40005559320777 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  1.36653752383074 bayes_pls_golite062009
  • channel activity
    		•  1.35767020846709 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  1.35767020846709 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  0.855931938850398 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  0.789955030733139 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  0.780717736949525 bayes_pls_golite062009
  • potassium channel activity
    		•  0.559325988586613 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.521778252711535 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  0.512152861387956 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  0.0912506266585198 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle