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Protein Overview: CE01063

General Information:
Name(s) found: CE01063 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00011368 locus:tftc-5 status:Confirmed UniProt:Q22093 protein_id:CAA84675.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 433 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: positive regulation of growth rate [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDFLNFTQQ KREEPQQLVL IKYPGIVKNV DKALQTMGGL QLISQSHFNN HSLELSHTPD  60
   61 NPYTSRIMAE RKPQDNVSSG TLHLVMKVRR KKIDPTKIKT SFLGLVNTVY TFDVMCDFQY 120
  121 LPLKKRVGCD TFEDLIPKLI PTDIASALSW WDASESVATP LFLPPYQFSR YLTPSTKILG 180
  181 RETDHTEKTK NAQKKGYGQN LRVERKALSV TVNAKEEFPL EPSQEAVDEA MFRCKHDEPH 240
  241 RLLRELFDER PMWTRMGLLY RTRIDDSLLR SILQKYAFYI LSGPWGRLWC KFGYDPRTDR 300
  301 NGGLYQTIMV SFRQHGSIPE RQRLKVSSDR AQTINHTADV SEPVTYMYEP GKLPRIRQMW 360
  361 YCVMDVRLPQ AMNELVAVVE NNTPPTPEEV RDKGWLPNTL LEKIRDLIKE DVARTSAELE 420
  421 GLMNDTAPGE EEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] MSA 6.050989 View MSA. No confident structure predictions are available.
    2 View Details [128..228] deduced N/A No confident structure predictions are available.
    3 View Details [229..314] FFAS03 1.57 DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE
    4 View Details [315..433] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  5.23858959608048 bayes_pls_golite062009
  • DNA binding
    		•  4.54024488199476 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.30331577005505 bayes_pls_golite062009
  • transcription factor activity
    		•  3.82269332595313 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  3.35557958497305 bayes_pls_golite062009
  • binding
    		•  3.17811844148923 bayes_pls_golite062009
  • transcription activator activity
    		•  2.13702350917359 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.12567455635303 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.9708626903609 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.50332889556988 bayes_pls_golite062009
  • transcription factor binding
    		•  0.752335897765285 bayes_pls_golite062009
  • protein binding
    		•  0.626618806841206 bayes_pls_golite062009
  • transition metal ion binding
    		•  0.282958203465101 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle