| Protein: | CE01063 |
| Organism: | Caenorhabditis elegans |
| Length: | 433 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01063.
| Description | E-value | Query Range |
Subject Range |
|
|
471.0 | [0..16] | [430..31] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MNDFLNFTQQ KREEPQQLVL IKYPGIVKNV DKALQTMGGL QLISQSHFNN HSLELSHTPD 60
61 NPYTSRIMAE RKPQDNVSSG TLHLVMKVRR KKIDPTKIKT SFLGLVNTVY TFDVMCDFQY 120
121 LPLKKRV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [128-228] |
1 11 21 31 41 51
| | | | | |
1 GCDTFEDLIP KLIPTDIASA LSWWDASESV ATPLFLPPYQ FSRYLTPSTK ILGRETDHTE 60
61 KTKNAQKKGY GQNLRVERKA LSVTVNAKEE FPLEPSQEAV D
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [229-314] |
1 11 21 31 41 51
| | | | | |
1 EAMFRCKHDE PHRLLRELFD ERPMWTRMGL LYRTRIDDSL LRSILQKYAF YILSGPWGRL 60
61 WCKFGYDPRT DRNGGLYQTI MVSFRQ
|
| Detection Method: | |
| Confidence: | 1.57 |
| Match: | 1bbyA |
| Description: | DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.54024488199476 | bayes_pls_golite062009 |
| nucleic acid binding | 4.30331577005505 | bayes_pls_golite062009 |
| transcription factor activity | 3.82269332595313 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 3.35557958497305 | bayes_pls_golite062009 |
| binding | 3.17811844148923 | bayes_pls_golite062009 |
| transcription activator activity | 2.13702350917359 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.12567455635303 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.50332889556988 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| protein binding | 0.626618806841206 | bayes_pls_golite062009 |
| transition metal ion binding | 0.282958203465101 | bayes_pls_golite062009 |
|
Region A: Residues: [315-433] |
1 11 21 31 41 51
| | | | | |
1 HGSIPERQRL KVSSDRAQTI NHTADVSEPV TYMYEPGKLP RIRQMWYCVM DVRLPQAMNE 60
61 LVAVVENNTP PTPEEVRDKG WLPNTLLEKI RDLIKEDVAR TSAELEGLMN DTAPGEEEF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
