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Protein Overview: elg1

General Information:
Name(s) found: elg1 / SPBC947.11c [Sanger Pombe]
Description(s) found:
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  • pir||T40771 hypothetical protein SPBC947.11c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582174|sp|O43086.1|ELG1_SCHPO RecName: Full=Telomere length regulation protein elg1; AltName: Full=Telomere elongation suppressor elg1 [NCBI NR]
  • gi|2894298|emb|CAA17039.1| DNA replication factor C complex subunit Elg1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112057|ref|NP_595265.1| DNA replication factor C complex subunit Elg1 [Schizosaccharomyces pombe] [NCBI NR]
  • DNA replication factor C complex subunit Elg1 [Sanger Pombe]
  • Telomere length regulation protein elg1 OS=Schizosaccharomyces pombe GN=elg1 PE=1 SV=1 [Swiss-Prot]
  • SIMILAR TO S. CEREVISIAE EFD (REQUIRED FOR STABILITY OF DIRECT DNA REPEATS): O43086; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||similar to S. cerevisiae EFD1 [pompepnew.fasta]
  • SPBC947.11c protein [4896.FASTAC]
  • |||replication factor C complex|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2894298|emb|CAA17039.1| SPBC947.11c [Schizosaccharomyces pombe]gi|7491760|pir||T40771 hypothetical protein SPBC947.11c - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||replication factor C complex |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O43086) Hypothetical protein [pompep4896_normal_reversed]
  • |elg1||DNA replication factor C complex subunit Elg1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC947.11c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Telomere length regulation protein elg1 (Telomere elongation suppressor elg1) [nr-271106-contam.fasta]
  • SPBC947.11c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Telomere length regulation protein elg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elg1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 920 amino acids

    Gene Ontology:
    Cellular Component: Elg1 RFC-like complex [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    chromosome, telomeric region [IEA]
    nuclear chromatin [ICLink to PubMed article]
    nuclear replication fork [IC]
    cytosol [IDALink to PubMed article]
    DNA replication factor C complex [ISSLink to PubMed article]
    Biological Process: DNA repair [IMPLink to PubMed article]
    DNA-dependent DNA replication [ISSLink to PubMed article]
    mitotic sister chromatid cohesion [ISS]
    DNA recombination [ISSLink to PubMed article]
    telomere maintenance [ISSLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    DNA clamp loader activity [ICLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIVGYLSAD SQSNPDLKSE NEAKEEKPIG RRHTMSPVPA TSENKYFGKS PLSGSRKPRR  60
   61 SRSLHKERSY MRKFFDMDME ESKDFENDQS LLVTLKVSTS LGQKIENILH PKLSNDTNST 120
  121 AFPPAKSSGE ASDTNILVEN INSQETVNSS PLVSELHYSN LADSPSNLRN TVTSMHPFFM 180
  181 SKSVKKNSEI KFVSEERGGT KPERLLDPLW PTPDSQSMLE YAGSIEPSVF WFPKKHLEEA 240
  241 ILEETSHLSF KEVLSSTTAN MITPLAEKNK TEVLQVTPSK LHTFALESLC FSPAPFIQKV 300
  301 LSRLLPSDPN VEMPMIPQIL EKGLWVSKYA PSKTQDCCAF SQCLSKIADW LRSCRLTKPE 360
  361 SSSVPPSSSI SRSSTIHSCT SSKRNEDSLS ESDFEPDIIE EEDDSDEFNP SVSRKKAKLT 420
  421 SSQFSNWMLV TGVTGIGKTS CLYAICRELN FEVVEIHPGM RRSGKELLER IGELTQSHIV 480
  481 DKSRLNNTPD ILILLEEVDI LFQDDRGFWQ AVSTLIEKSK RPVVMTCNET DFLPSAFLQE 540
  541 DHIVQFQSIS SALLTDYISS VLYADRCIIS RNVVESISYR YGSDLRGILM QLNFWSLVNF 600
  601 PSLPSKDKQD DSHEPFIEAT ISAFDEGVGV YNPRIQTSED LLQTYSEEQM GDIGLLFMPN 660
  661 LVNWRKVCVP KSEMEEKEAI MEKLIYSHQY ADSLSYVDYR FSSQPTIYET YELMNDSASF 720
  721 EDMSLECRDN CANAFQDNLV GFPTISNPFH ANAPPEPHEL KLQYHSFCFI NNLFSKSSLK 780
  781 AISSNDSIVP KALNNRELQL SALASTIGYK LDPDDVYNIL SFLSFANSQV TSYTPPNSID 840
  841 RPNDILILEV APFVRCMRRY DRIRLNSYKL LLSSKGRSAS HISRRGAASI LRSAGYNYGR 900
  901 LQYLEGSDRI LSTWFSTTLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] deduced N/A No confident structure predictions are available.
    2 View Details [91..256] PSI-BLAST 63.69897 VCP/p97
    3 View Details [257..619] PSI-BLAST 6.522879 No description for 2c9oA was found.
    4 View Details [620..728] PSI-BLAST 29.045757 ADP Bound E. coli Clamp Loader Complex
    5 View Details [729..825] PSI-BLAST 59.0 EDTA treated
    6 View Details [826..920] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • pyrophosphatase activity
    		•  2.23646936731119 bayes_pls_golite062009
  • binding
    		•  1.62860302498201 bayes_pls_golite062009
  • catalytic activity
    		•  1.32370671504792 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2537888487362 bayes_pls_golite062009
  • protein binding
    		•  0.324679002546113 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.248432446853676 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.217252531553173 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.215962398124297 bayes_pls_golite062009
  • ATPase activity
    		•  0.0740243885501273 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle