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Protein Overview: SPBC1711.09c

General Information:
Name(s) found: SPBC1711.09c [Sanger Pombe]
Description(s) found:
Found 15 descriptions.
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  • SNARE associated Golgi protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 270 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    integral to Golgi membrane [ISSLink to PubMed article]
    Biological Process: vesicle-mediated transport [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPIALAAI GILIVVFAIL LAVFHNDLLA IAMPIAERIA KLPMSFLIAL VLIAASSIPP  60
   61 LLGQDPLALL IGAVWGLNVG FWTVVCGIFI GETIAFMAYR YFLEQKAQEF REHHEEHYGT 120
  121 FVKIVEEGSY PLIWLIRLSF LPTHFTTVFF ATLPELSYIG WAIAFWLSCF KYLVPVYAGY 180
  181 CIVHNKSSAA NIVGIVLSIV VTLGTLAFLI VRYKAIKNST LEDSTNSTSD VLNHLESQPT 240
  241 DSIDLRHLEQ TSEQNETDNS ERKHLLSHQH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] Pfam 17.443697 No description for PF09335.2 was found. No confident structure predictions are available.
    2 View Details [197..270] FFAS03 0.975 Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.11787660816151 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.19116645217069 bayes_pls_golite062009
  • DNA binding
    		•  1.04053347975523 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.865191594335631 bayes_pls_golite062009
  • protein binding
    		•  0.633493744140483 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0467771477920803 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle