YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1711.09c
Organism:	Schizosaccharomyces pombe
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1711.09c.

Description	E-value	Query Range	Subject Range
gi\|95931277, gi\|... - gi\|95931277\|ref\|ZP_01313995.1\| protein of unknown function DUF224, cysteine-rich region [Desulfuromo...	167.0	[0..2]	[220..381]
gi\|46440900, gi\|... - gi\|68473547\|ref\|XP_719098.1\| hypothetical protein CaO19.5534 [Candida albicans SC5314], gi\|46440900\|... orf19.5534 - orf19.5534 CGDID:CAL0006141 Assembly 19, Contig19-10230 (35074, 34022) CDS, reverse complemented, tr...	165.0	[0..3]	[259..54]
gi\|46096024, gi\|... - gi\|71003506\|ref\|XP_756419.1\| hypothetical protein UM00272.1 [Ustilago maydis 521], ref\|XP_397887.1\| ...	164.0	[0..3]	[241..201]
gi\|32476849, gi\|... - gi\|32476849\|ref\|NP_869843.1\| hypothetical protein RB11207 [Rhodopirellula baltica SH 1], gi\|32447397...	162.0	[0..7]	[234..16]
gi\|88915578, gi\|... - gi\|88937684\|ref\|ZP_01143235.1\| conserved hypothetical protein [Geobacter uraniumreducens Rf4], gi\|88...	151.0	[0..2]	[225..399]
gi\|17229699, gi\|... - gi\|17229699\|ref\|NP_486247.1\| hypothetical protein alr2207 [Nostoc sp. PCC 7120], gi\|17131298\|dbj\|BAB... gi\|25326049 - pir\|\|AI2081 hypothetical protein alr2207 [imported] - Nostoc sp. (strain PCC 7120)	141.0	[0..4]	[233..29]
gi\|89952893, gi\|... - gi\|90023293\|ref\|YP_529120.1\| mercuric reductase, membrane-associated [Saccharophagus degradans 2-40]...	139.0	[0..4]	[238..3]
gi\|75908987, gi\|... - gi\|75908987\|ref\|YP_323283.1\| hypothetical protein Ava_2775 [Anabaena variabilis ATCC 29413], gi\|7570...	138.0	[0..2]	[226..8]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPIALAAI GILIVVFAIL LAVFHNDLLA IAMPIAERIA KLPMSFLIAL VLIAASSIPP  60
   61 LLGQDPLALL IGAVWGLNVG FWTVVCGIFI GETIAFMAYR YFLEQKAQEF REHHEEHYGT 120
  121 FVKIVEEGSY PLIWLIRLSF LPTHFTTVFF ATLPELSYIG WAIAFWLSCF KYLVPVYAGY 180
  181 CIVHNKSSAA NIVGIV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.443697
Match:	PF09335.2
Description:	No description for PF09335.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [197-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSIVVTLGTL AFLIVRYKAI KNSTLEDSTN STSDVLNHLE SQPTDSIDLR HLEQTSEQNE  60
   61 TDNSERKHLL SHQH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.975
Match:	1zu1A
Description:	Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.11787660816151	bayes_pls_golite062009
nucleic acid binding	1.19116645217069	bayes_pls_golite062009
DNA binding	1.04053347975523	bayes_pls_golite062009
transcription regulator activity	0.865191594335631	bayes_pls_golite062009
protein binding	0.633493744140483	bayes_pls_golite062009
transcription factor activity	0.0467771477920803	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: