YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1711.09c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPIALAAI GILIVVFAIL LAVFHNDLLA IAMPIAERIA KLPMSFLIAL VLIAASSIPP  60
   61 LLGQDPLALL IGAVWGLNVG FWTVVCGIFI GETIAFMAYR YFLEQKAQEF REHHEEHYGT 120
  121 FVKIVEEGSY PLIWLIRLSF LPTHFTTVFF ATLPELSYIG WAIAFWLSCF KYLVPVYAGY 180
  181 CIVHNKSSAA NIVGIVLSIV VTLGTLAFLI VRYKAIKNST LEDSTNSTSD VLNHLESQPT 240
  241 DSIDLRHLEQ TSEQNETDNS ERKHLLSHQH

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.90
Transmembrane Helix	6	26	0.94
Cytoplasmic	27	41	0.81
Transmembrane Helix	42	62	0.91
Non-Cytoplasmic	63	78	0.72
Transmembrane Helix	79	102	0.81
Cytoplasmic	103	139	0.88
Transmembrane Helix	140	170	0.70
Non-Cytoplasmic	171	188	0.55
Transmembrane Helix	189	211	0.91
Cytoplasmic	212	270	0.62