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Protein Overview: snd1

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..165] PSI-BLAST 27.522879 No description for 2f0uA was found.
2 View Details [166..313] PSI-BLAST 19.69897 Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation
3 View Details [314..476] Pfam 15.853872 No description for PF00565.8 was found. No confident structure predictions are available.
4 View Details [477..627] FFAS03 4.63 ACCOMMODATION OF INSERTION MUTATIONS ON THE SURFACE AND IN THE INTERIOR OF STAPHYLOCOCCAL NUCLEASE
5 View Details [628..878] PSI-BLAST 54.522879 No description for 2hqeA was found.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • catalytic activity
  • 0.545407789079971 bayes_pls_golite062009
  • nuclease activity
  • 0.47992885240838 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • catalytic activity
  • 0.532570324528821 bayes_pls_golite062009
  • nuclease activity
  • 0.220383451830433 bayes_pls_golite062009
    5
    Term Confidence Notes
  • transcription regulator activity
  • 3.34067645460735 bayes_pls_golite062009
  • transcription repressor activity
  • 3.06808416304746 bayes_pls_golite062009
  • binding
  • 3.03932294945523 bayes_pls_golite062009
  • nucleic acid binding
  • 2.39870293911569 bayes_pls_golite062009
  • DNA binding
  • 2.38812251097879 bayes_pls_golite062009
  • histone methyltransferase activity
  • 2.07175269912162 bayes_pls_golite062009
  • histone binding
  • 1.90499817035542 bayes_pls_golite062009
  • protein binding
  • 1.76914488602752 bayes_pls_golite062009
  • transcription corepressor activity
  • 1.55732936245077 bayes_pls_golite062009
  • chromatin binding
  • 1.53982562888655 bayes_pls_golite062009
  • transcription factor binding
  • 1.49481919243505 bayes_pls_golite062009
  • transcription factor activity
  • 1.41108699101741 bayes_pls_golite062009
  • DNA-methyltransferase activity
  • 1.40512830025766 bayes_pls_golite062009
  • transcription cofactor activity
  • 1.36802409360413 bayes_pls_golite062009
  • DNA (cytosine-5-)-methyltransferase activity
  • 1.34644198396495 bayes_pls_golite062009
  • lysine N-methyltransferase activity
  • 0.72077437792468 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
  • 0.72077437792468 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
  • 0.72077437792468 bayes_pls_golite062009
  • retinoid X receptor binding
  • 0.47657909093375 bayes_pls_golite062009
  • retinoic acid receptor binding
  • 0.43555270589681 bayes_pls_golite062009
  • transcription activator activity
  • 0.262486595331603 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.141502107934206 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle