| Protein: | snd1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 878 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snd1.
| Description | E-value | Query Range |
Subject Range |
|
|
724.0 | [0..6] | [877..280] |
|
|
714.0 | [0..6] | [877..98] |
|
|
712.0 | [0..6] | [877..21] |
|
|
711.0 | [0..6] | [877..99] |
|
|
711.0 | [0..6] | [877..75] |
|
|
710.0 | [0..6] | [877..21] |
|
|
708.0 | [0..6] | [877..21] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MSQYVSSMIK YAQSGDSFNI LIKDNAKKIT EKQFSLAYVE CPRFRREGDE PFAFEAQEFS 60
61 RRLVVGRPAS VSTLYVIPTS KREYGRIRTS EFDLAESLLR EGLAKLRPEA TRNEGTSENS 120
121 YFVSLEEAQD HAQQYKLGIW GPSDDVVVTE KANPANPAKF LKAHK
|
| Detection Method: |  |
| Confidence: | 27.522879 |
| Match: | 2f0uA |
| Description: | No description for 2f0uA was found. |
|
Region A: Residues: [166-313] |
1 11 21 31 41 51
| | | | | |
1 GKKLNGIVET IRNGDQVRVR LFLSPKQHQL VTISLAGVRC PRSTFTATSP EQTSSEQEPC 60
61 GDEAKQFVVT RLLQRNVVIE LLDLAPNGVS FLGNVLHPAG NIATFLLSSG LGRVADNHIS 120
121 ALGPETMQSL RTIERKAKIS RLGIWKNI
|
| Detection Method: | |
| Confidence: | 19.69897 |
| Match: | 1rknA |
| Description: | Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.545407789079971 | bayes_pls_golite062009 |
| nuclease activity | 0.47992885240838 | bayes_pls_golite062009 |
|
Region A: Residues: [314-476] |
1 11 21 31 41 51
| | | | | |
1 SVSIPDINSL SLKDYSAVVS RVISTDTLEV RKDNGVECRI QLSSIRHPRP SNEKEAPYQL 60
61 EAREFLRKKI IGKRVQVSLD FIRPGQNDLP AINNCTVKLS DGTNVALMVV KSGYATVIRY 120
121 RMDSVDRSPI YDFLIEAEKA AQEGRKGMWS GKKPAYENIV NAS
|
| Detection Method: | |
| Confidence: | 15.853872 |
| Match: | PF00565.8 |
| Description: | No description for PF00565.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [477-627] |
1 11 21 31 41 51
| | | | | |
1 ESSLRSRQYL SSLQRTRKLS VIIENVISGS RFRCFCPKEN CYFMFACAGI RTPRTARNDQ 60
61 EKGEPFAEES LSLAKSLLQH DAQVEILSVD NNGCFLGDIY VNHDTNFALK LLSQGLAWCQ 120
121 GYASQSNVQY SQYHDTEAAA KEQKVGMWHD Y
|
| Detection Method: | |
| Confidence: | 4.63 |
| Match: | 1staA |
| Description: | ACCOMMODATION OF INSERTION MUTATIONS ON THE SURFACE AND IN THE INTERIOR OF STAPHYLOCOCCAL NUCLEASE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.532570324528821 | bayes_pls_golite062009 |
| nuclease activity | 0.220383451830433 | bayes_pls_golite062009 |
|
Region A: Residues: [628-878] |
1 11 21 31 41 51
| | | | | |
1 VPPEKKAAST EKESENTVKE PIYLDIVLSD IAEDGKFSFQ IIGTGIQQLE TLMSDLGSLK 60
61 KSFKPSEKIN VGMNVAAISA LDNAMYRGRV LRCDRENQAA DVLLYDYGSV EQIPFKNISS 120
121 LPDTYTKLKP QAQLARLSYV QLPPPSSDYY EDARLVFREL AMNKGLVAKV DGHEGNVYSV 180
181 TLYNPSDGSD FSDCINAQLV ALGMASVIPK KKTSHFEKDT ASLNILEEHQ QEARLNHIGF 240
241 WVYGDPLEYE D
|
| Detection Method: | |
| Confidence: | 54.522879 |
| Match: | 2hqeA |
| Description: | No description for 2hqeA was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 3.34067645460735 | bayes_pls_golite062009 |
| transcription repressor activity | 3.06808416304746 | bayes_pls_golite062009 |
| binding | 3.03932294945523 | bayes_pls_golite062009 |
| nucleic acid binding | 2.39870293911569 | bayes_pls_golite062009 |
| DNA binding | 2.38812251097879 | bayes_pls_golite062009 |
| histone methyltransferase activity | 2.07175269912162 | bayes_pls_golite062009 |
| histone binding | 1.90499817035542 | bayes_pls_golite062009 |
| protein binding | 1.76914488602752 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.55732936245077 | bayes_pls_golite062009 |
| chromatin binding | 1.53982562888655 | bayes_pls_golite062009 |
| transcription factor binding | 1.49481919243505 | bayes_pls_golite062009 |
| transcription factor activity | 1.41108699101741 | bayes_pls_golite062009 |
| DNA-methyltransferase activity | 1.40512830025766 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.36802409360413 | bayes_pls_golite062009 |
| DNA (cytosine-5-)-methyltransferase activity | 1.34644198396495 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 0.72077437792468 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 0.72077437792468 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 0.72077437792468 | bayes_pls_golite062009 |
| retinoid X receptor binding | 0.47657909093375 | bayes_pls_golite062009 |
| retinoic acid receptor binding | 0.43555270589681 | bayes_pls_golite062009 |
| transcription activator activity | 0.262486595331603 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.141502107934206 | bayes_pls_golite062009 |
