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Protein Overview: snd1

General Information:
Name(s) found: snd1 / SPCC645.08c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • RNA-binding protein Snd1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 878 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    RNA-induced silencing complex [IEA]
    Biological Process: RNA interference [IEA]
    sphingolipid biosynthetic process [NAS]
    Molecular Function: hydrolase activity, acting on ester bonds [IEA]
    RNA binding [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQYVSSMIK YAQSGDSFNI LIKDNAKKIT EKQFSLAYVE CPRFRREGDE PFAFEAQEFS  60
   61 RRLVVGRPAS VSTLYVIPTS KREYGRIRTS EFDLAESLLR EGLAKLRPEA TRNEGTSENS 120
  121 YFVSLEEAQD HAQQYKLGIW GPSDDVVVTE KANPANPAKF LKAHKGKKLN GIVETIRNGD 180
  181 QVRVRLFLSP KQHQLVTISL AGVRCPRSTF TATSPEQTSS EQEPCGDEAK QFVVTRLLQR 240
  241 NVVIELLDLA PNGVSFLGNV LHPAGNIATF LLSSGLGRVA DNHISALGPE TMQSLRTIER 300
  301 KAKISRLGIW KNISVSIPDI NSLSLKDYSA VVSRVISTDT LEVRKDNGVE CRIQLSSIRH 360
  361 PRPSNEKEAP YQLEAREFLR KKIIGKRVQV SLDFIRPGQN DLPAINNCTV KLSDGTNVAL 420
  421 MVVKSGYATV IRYRMDSVDR SPIYDFLIEA EKAAQEGRKG MWSGKKPAYE NIVNASESSL 480
  481 RSRQYLSSLQ RTRKLSVIIE NVISGSRFRC FCPKENCYFM FACAGIRTPR TARNDQEKGE 540
  541 PFAEESLSLA KSLLQHDAQV EILSVDNNGC FLGDIYVNHD TNFALKLLSQ GLAWCQGYAS 600
  601 QSNVQYSQYH DTEAAAKEQK VGMWHDYVPP EKKAASTEKE SENTVKEPIY LDIVLSDIAE 660
  661 DGKFSFQIIG TGIQQLETLM SDLGSLKKSF KPSEKINVGM NVAAISALDN AMYRGRVLRC 720
  721 DRENQAADVL LYDYGSVEQI PFKNISSLPD TYTKLKPQAQ LARLSYVQLP PPSSDYYEDA 780
  781 RLVFRELAMN KGLVAKVDGH EGNVYSVTLY NPSDGSDFSD CINAQLVALG MASVIPKKKT 840
  841 SHFEKDTASL NILEEHQQEA RLNHIGFWVY GDPLEYED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] PSI-BLAST 27.522879 No description for 2f0uA was found.
    2 View Details [166..313] PSI-BLAST 19.69897 Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation
    3 View Details [314..476] Pfam 15.853872 No description for PF00565.8 was found. No confident structure predictions are available.
    4 View Details [477..627] FFAS03 4.63 ACCOMMODATION OF INSERTION MUTATIONS ON THE SURFACE AND IN THE INTERIOR OF STAPHYLOCOCCAL NUCLEASE
    5 View Details [628..878] PSI-BLAST 54.522879 No description for 2hqeA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.545407789079971 bayes_pls_golite062009
  • nuclease activity
    		•  0.47992885240838 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • catalytic activity
    		•  0.532570324528821 bayes_pls_golite062009
  • nuclease activity
    		•  0.220383451830433 bayes_pls_golite062009
    5
    Term Confidence Notes
  • transcription regulator activity
    		•  3.34067645460735 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.06808416304746 bayes_pls_golite062009
  • binding
    		•  3.03932294945523 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.39870293911569 bayes_pls_golite062009
  • DNA binding
    		•  2.38812251097879 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  2.07175269912162 bayes_pls_golite062009
  • histone binding
    		•  1.90499817035542 bayes_pls_golite062009
  • protein binding
    		•  1.76914488602752 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.55732936245077 bayes_pls_golite062009
  • chromatin binding
    		•  1.53982562888655 bayes_pls_golite062009
  • transcription factor binding
    		•  1.49481919243505 bayes_pls_golite062009
  • transcription factor activity
    		•  1.41108699101741 bayes_pls_golite062009
  • DNA-methyltransferase activity
    		•  1.40512830025766 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.36802409360413 bayes_pls_golite062009
  • DNA (cytosine-5-)-methyltransferase activity
    		•  1.34644198396495 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  0.72077437792468 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  0.72077437792468 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  0.72077437792468 bayes_pls_golite062009
  • retinoid X receptor binding
    		•  0.47657909093375 bayes_pls_golite062009
  • retinoic acid receptor binding
    		•  0.43555270589681 bayes_pls_golite062009
  • transcription activator activity
    		•  0.262486595331603 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.141502107934206 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle