YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC36B7.05c

General Information:
Name(s) found: SPBC36B7.05c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • phosphatidylinositol(3)-phosphate binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 279 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    fungal-type vacuole membrane [ISSLink to PubMed article]
    late endosome [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: protein ubiquitination [ISSLink to PubMed article]
    Molecular Function: ubiquitin-protein ligase activity [ISSLink to PubMed article]
    zinc ion binding [IEA]
    phosphatidylinositol-3-phosphate binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDETTYPE ALRRLLIETP AAIWQLDDES AQCNNCGGPF TWFRRRHHCR WCGKLFCYNC  60
   61 CNSFAKLPVS SVSVDPTEDL IPQDMFIRDP DFLANDNDDD NDSQDSSWIN VRVCVNCRQQ 120
  121 LSELKELDLP YPITTCLNDD TTTRSNNQVI QSSCGNNLQR IEEPDDFVEC PVCYAPLSSF 180
  181 KTLSERESHV ANCLSNNSSS PRNMTEFLKH ARRYISMQLS ETSPCLGQEC IICFEEFAAG 240
  241 DRVARIEYCL CIFHLKCYRD WLSTGAAGCP VHAATLHLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..75] PSI-BLAST 3.522879 High-resolution solution structure of the LM5-1 FYVE domain from Leishmania major
    2 View Details [76..151] deduced N/A No confident structure predictions are available.
    3 View Details [152..279] PSI-BLAST 4.09691 RAG1 DIMERIZATION DOMAIN

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  5.65442784325159 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  5.55686022186257 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  4.59153177011595 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  2.57382484274962 bayes_pls_golite062009
  • binding
    		•  2.19426901055464 bayes_pls_golite062009
  • protein binding
    		•  1.73461977726143 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  1.2126425713931 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  1.03469202541773 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.708499177773075 bayes_pls_golite062009
  • ligase activity
    		•  0.63517530468004 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.553991532499653 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  0.50197530717959 bayes_pls_golite062009
  • ubiquitin thiolesterase activity
    		•  0.265769062717221 bayes_pls_golite062009
  • DNA binding
    		•  0.227671243150662 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0941589668589109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle