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Protein Overview: SPCC895.06

General Information:
Name(s) found: SPCC895.06 [Sanger Pombe]
Description(s) found:
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  • pir||T41644 hypothetical trp-asp repeat protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74676208|sp|O94533.1|YCA6_SCHPO RecName: Full=Uncharacterized WD repeat-containing protein C895.06 [NCBI NR]
  • gi|4164425|emb|CAA22842.1| elongator complex subunit Elp2 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075547|ref|NP_588047.1| RNA polymerase II elongator complex subunit Elp2 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • RNA polymerase II elongator complex subunit Elp2 [Sanger Pombe]
  • Uncharacterized WD repeat-containing protein C895.06 OS=Schizosaccharomyces pombe GN=SPCC895.06 PE=2 SV=1 [Swiss-Prot]
  • WD REPEAT PROTEIN: O94533; [pompepVF.fasta]
  • Hypothetical trp-asp repeat protein [pompep4896]
  • |||WD repeat protein [pompepnew.fasta]
  • SPCC895.06 protein [4896.FASTAC]
  • |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • hypothetical trp-asp repeat protein [Schizosaccharomyces pombe]gi|4164425|emb|CAA22842.1| SPCC895.06 [Schizosaccharomyces pombe]gi|7492054|pir||T41644 hypothetical trp-asp repeat protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O94533) Hypothetical trp-asp repeat protein [pompep4896_normal_reversed]
  • |||elongator complex subunit Elp2 |Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC895.06 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC895.06 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |elp2||elongator complex subunit Elp2 |Schizosaccharomyces pombe|chr 3|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 760 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Elongator holoenzyme complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: tRNA modification [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQYEALHVG CNRIPTAATW SSNLGLIYGA ERLIAVADPF KEINYLMAGH SGRINCVCEL  60
   61 ATNSEYRSPF ILSGASDKTL RLWQLEEEYF TCIKTIELEA TVNCLCVNEN LVVCGCSNSS 120
  121 CIVYSWNAEQ RNLTEISRFT CSEIIPLEFA IVKLDHGIIL TVCGSSKKIM VYGSDSAISS 180
  181 FKLKAVLRGH LDWVRTLSFK KTSGSTATLA SGSQDRYIRL WNISLWGSED EKVSEEFFES 240
  241 VLSNKPVRFT LGKIDLKIVF DALLMGHEDW VMSVDWHPTK EMILSSSADS SMIVWEPDTN 300
  301 TGIWVVTGRM GEMASSHGST TATGSAGGFW GGLWNPNGNC VVCWGRTGGW RLWKQDAGQW 360
  361 LQLPSISGHT KSVKGVAWDP EGKFYLSAGT DQTTRLFARF KKDNAWHEMA RPQIHGYDLT 420
  421 SISCMPSRIG FLSCADEKVS RVFKFPKTIV RLLYRLCDTN IGEESLPDAA NVPLLGLSNK 480
  481 ATTASETGTV NAEEVQTPVA DVIGSLNHPP FEEHLQRLLL FPEVEKLFGH GYEVYACAIS 540
  541 NNGNIAATSC KSQTPEHAVI RLYETQSWNQ QQVLKGHSLT VTTIKFSPDD RYILSAGRDR 600
  601 LVCLHEQAEN LLDYNNFASI KAHSRIIWDA SWAPKEMGYF FATASRDKFV KFWKINDNKK 660
  661 ICDVAALQFS DAVTAVDFAP FFHNDELLLA VGTEAGKIFI WRCPRENLTK WYPTRLPDHM 720
  721 APMESINQIL WKPTFETMGL YSLLIAGEDT SVRLLNVTLG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] PSI-BLAST 64.30103 No description for 2ovpB was found.
    2 View Details [88..760] PSI-BLAST 38.0 Actin interacting protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • small conjugating protein ligase activity
    		•  3.13054264433898 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  3.00646122159505 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
    		• 2.40807791198019 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.3610959773142 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.30918780727915 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  2.17819869145391 bayes_pls_golite062009
  • snoRNA binding
    		•  1.76991421703041 bayes_pls_golite062009
  • DNA binding
    		•  1.71685536470455 bayes_pls_golite062009
  • RNA binding
    		•  1.50295916950465 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  1.4866444894826 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.21305848427711 bayes_pls_golite062009
  • transcription factor activity
    		•  1.08768505897883 bayes_pls_golite062009
  • ligase activity
    		•  0.93058496790047 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.676924760416604 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.658573452658359 bayes_pls_golite062009
  • transcription factor binding
    		•  0.489473003915035 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.426429095658617 bayes_pls_golite062009
  • kinase activity
    		•  0.387572734234845 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30761651528651 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226335610368636 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.182612389752591 bayes_pls_golite062009
  • chromatin binding
    		•  0.151977098745772 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle