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Protein Overview: usp104

General Information:
Name(s) found: usp104 / SPAC4D7.13 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • U1 snRNP-associated protein Usp104 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 695 amino acids

    Gene Ontology:
    Cellular Component: commitment complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: nuclear mRNA 5'-splice site recognition [IC]
    nuclear mRNA splicing, via spliceosome [IPILink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPPWQTSE YDETEGFTSN QEGPSAAPSK TVASDWHEVK TEDSRVYYYN SVTRKSVWEK  60
   61 PEELMNDFEK KLSKLAWKEY ATADGKKYWY NVNTRESVWD IPDEYKAALV DEPEQQKKAL 120
  121 SSKIKSNDNK PAVQSIQRHG PDVAAPSSQP AKDQSQQISQ GSHKRTINFV QQKDKRQKRS 180
  181 NDYQHENYDT YEAAERAFFK FLDSHNVNPS WTWEQTVREL CDAKGYYVMK DPWHRKCAFD 240
  241 AYILNYLTDQ SDAEKNRVTK IRKEFIEMLK SSDKIHSYTL WRTVKNEFSS HPAFNATSSE 300
  301 TEQQQLFFEY KQKLLEDEKQ LEKDRRKEAL DDFCSLLRNM NFEPYTRWSV AQAKFDQDPR 360
  361 YTRNSNMKYL SKLDALVAFE DHVKHLEREY ILDKQKQKKE KHRIERKNRD AFRALLQDLR 420
  421 VQKKITLRTK WKELYPIIKD DPRYLNLLGQ SGSTPLDLFW DTIVDLENMY REKRNLVLDC 480
  481 LEVLQISVDD TSNIPEIIAR LSEKLKDREE SEAVTEDLIE EVVNRLRDKA IHKKAEEKRA 540
  541 DERRIRRKID NLRSAIKYLK PPISADASYD EIRPLISILP EFAALHSEEH RMAAFDKYIR 600
  601 RLREKRELEK QYQNRRGYYD VGKDESYLAN SARPHSGYED GRLEYSADLA SKSNRNEINT 660
  661 MQDVQENSIS HVTATQPAVK NIVDDAESSE EGEIR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] PSI-BLAST 4.221849 Splicing factor prp40
    2 View Details [108..249] FFAS03 2.77 No description for 2doeA was found.
    3 View Details [250..327] FFAS03 2.21 Solution structure of the FF domain of human Formin-binding protein 3
    4 View Details [328..695] PSI-BLAST 11.69897 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.16402927467227 bayes_pls_golite062009
  • binding
    		•  2.02935060794966 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.56045209816163 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.54071619149498 bayes_pls_golite062009
  • transcription activator activity
    		•  1.50941346594353 bayes_pls_golite062009
  • transcription factor binding
    		•  1.46474521462806 bayes_pls_golite062009
  • protein binding
    		•  0.772594643545448 bayes_pls_golite062009
  • catalytic activity
    		•  0.210712504691113 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle