| Protein: | usp104 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 695 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for usp104.
| Description | E-value | Query Range |
Subject Range |
|
|
200.0 | [0..32] | [694..1202] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 MSAPPWQTSE YDETEGFTSN QEGPSAAPSK TVASDWHEVK TEDSRVYYYN SVTRKSVWEK 60
61 PEELMNDFEK KLSKLAWKEY ATADGKKYWY NVNTRESVWD IPDEYKA
|
| Detection Method: |  |
| Confidence: | 4.221849 |
| Match: | 1o6wA |
| Description: | Splicing factor prp40 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.16402927467227 | bayes_pls_golite062009 |
| binding | 2.02935060794966 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.56045209816163 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.54071619149498 | bayes_pls_golite062009 |
| transcription activator activity | 1.50941346594353 | bayes_pls_golite062009 |
| transcription factor binding | 1.46474521462806 | bayes_pls_golite062009 |
| protein binding | 0.772594643545448 | bayes_pls_golite062009 |
| catalytic activity | 0.210712504691113 | bayes_pls_golite062009 |
|
Region A: Residues: [108-249] |
1 11 21 31 41 51
| | | | | |
1 ALVDEPEQQK KALSSKIKSN DNKPAVQSIQ RHGPDVAAPS SQPAKDQSQQ ISQGSHKRTI 60
61 NFVQQKDKRQ KRSNDYQHEN YDTYEAAERA FFKFLDSHNV NPSWTWEQTV RELCDAKGYY 120
121 VMKDPWHRKC AFDAYILNYL TD
|
| Detection Method: | |
| Confidence: | 2.77 |
| Match: | 2doeA |
| Description: | No description for 2doeA was found. |
|
Region A: Residues: [250-327] |
1 11 21 31 41 51
| | | | | |
1 QSDAEKNRVT KIRKEFIEML KSSDKIHSYT LWRTVKNEFS SHPAFNATSS ETEQQQLFFE 60
61 YKQKLLEDEK QLEKDRRK
|
| Detection Method: | |
| Confidence: | 2.21 |
| Match: | 2cqnA |
| Description: | Solution structure of the FF domain of human Formin-binding protein 3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [328-695] |
1 11 21 31 41 51
| | | | | |
1 EALDDFCSLL RNMNFEPYTR WSVAQAKFDQ DPRYTRNSNM KYLSKLDALV AFEDHVKHLE 60
61 REYILDKQKQ KKEKHRIERK NRDAFRALLQ DLRVQKKITL RTKWKELYPI IKDDPRYLNL 120
121 LGQSGSTPLD LFWDTIVDLE NMYREKRNLV LDCLEVLQIS VDDTSNIPEI IARLSEKLKD 180
181 REESEAVTED LIEEVVNRLR DKAIHKKAEE KRADERRIRR KIDNLRSAIK YLKPPISADA 240
241 SYDEIRPLIS ILPEFAALHS EEHRMAAFDK YIRRLREKRE LEKQYQNRRG YYDVGKDESY 300
301 LANSARPHSG YEDGRLEYSA DLASKSNRNE INTMQDVQEN SISHVTATQP AVKNIVDDAE 360
361 SSEEGEIR
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
