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Protein Overview: arp9

General Information:
Name(s) found: arp9 / SPAC1071.06 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • SWI/SNF and RSC complex subunit Arp9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 523 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    RSC complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ISSLink to PubMed article]
    positive regulation of gene-specific transcription from RNA polymerase II promoter [IEPLink to PubMed article]
    negative regulation of gene-specific transcription from RNA polymerase II promoter [IEPLink to PubMed article]
    Molecular Function: general RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSFRDDHII VIQTGSLYHR ATFGLAESLE PPTIRVRTRV GKNDNGEYVF TNKEDINMED  60
   61 PNVKTDETKV ETSESTSEQP SNSNVTEEKN MGSSFHSECK VDDFTPLPNE IQPIQRGRVV 120
  121 DWEALKAFWK HLYSLLLKDP NDTTFRYPVC LVIPTYWSLY DRELATQFFF EECQVPGFTI 180
  181 AYEPLMGLYA IGILHGLVID IGYEKTDITP ILDGQIIFTA TQQLPLGGRY MTQHLQNLLR 240
  241 ESLPTLKSSG QYVSKEDITE LFAEQVKCSE IAQVVRDEQD TAKDPVKALT STNNVEEEDP 300
  301 AEDIGKIIAS GQTRAYLAQK EREKNGESEK DEKPDNTDVE FQTIAIEPLG DCIVGRERFK 360
  361 ICEPIFHRPS NETVSLPEAI YITIKNYAAN YKRRNDLWEN IIVLGCGSRI RGFRECLIQQ 420
  421 LQFKYQLSGS LEPYYAAQGT DSILGMTTMP PTPYPALINP CKILPDYFPS WKPDAGTNAM 480
  481 FEELAFLGGS IVAKTSFNES VSSHYVTLEE YAQHGPTAIH TKQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..523] PSI-BLAST 133.0 Actin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone acetyltransferase activity
    		•  4.28232216932019 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  4.28232216932019 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  3.14961582364442 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.11425505645918 bayes_pls_golite062009
  • actin binding
    		•  2.955791490673 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  2.69348633032984 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  2.44825347420194 bayes_pls_golite062009
  • structural molecule activity
    		•  2.37892721989886 bayes_pls_golite062009
  • binding
    		•  2.11855816699924 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.09111975841662 bayes_pls_golite062009
  • acetyltransferase activity
    		•  2.07817518361957 bayes_pls_golite062009
  • protein binding
    		•  2.00711904074672 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.84294882554466 bayes_pls_golite062009
  • DNA binding
    		•  1.70014394990425 bayes_pls_golite062009
  • actin filament binding
    		•  1.46443668299938 bayes_pls_golite062009
  • myosin binding
    		•  1.42865156375885 bayes_pls_golite062009
  • transcription activator activity
    		•  1.35676801272576 bayes_pls_golite062009
  • transporter activity
    		•  1.2883466875237 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.19428728049016 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.16749728168925 bayes_pls_golite062009
  • kinase activity
    		•  1.11102445353265 bayes_pls_golite062009
  • transcription factor activity
    		•  1.06678984888387 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.953663805249074 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.900931843471417 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.898645342556399 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.875671218597808 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.78242344952806 bayes_pls_golite062009
  • ATPase activity
    		•  0.687771333492666 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.574998559133169 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.541702142383339 bayes_pls_golite062009
  • nucleosome binding
    		•  0.329990231856661 bayes_pls_golite062009
  • catalytic activity
    		•  0.296484721581333 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  0.123282448317819 bayes_pls_golite062009
  • transferase activity
    		•  0.105619024604158 bayes_pls_golite062009
  • acyltransferase activity
    		•  0.0596003372263518 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  0.0568891812635073 bayes_pls_golite062009
  • chromatin binding
    		•  0.0489277194984092 bayes_pls_golite062009
  • unfolded protein binding
    		•  0.0304569608189402 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle