YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC3B9.03

General Information:
Name(s) found: SPBC3B9.03 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • signal recognition particle receptor alpha subunit Srp101 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 547 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    signal recognition particle receptor complex [ISSLink to PubMed article]
    Biological Process: SRP-dependent cotranslational protein targeting to membrane [ICLink to PubMed article]
    Molecular Function: GTP binding [ISSLink to PubMed article]
    GTPase activity [ISSLink to PubMed article]
    signal recognition particle binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDLFAIVNK GGIVLWKKTN SLVNLKCLQV LFHEAFLSEQ RTVNNTVTFD RYTMQYQEAT  60
   61 QYSIVFVVVF QDLKCMAYSQ SLLNSAHNIF LNLFKEKLED RQVPNEAEVE KLFAPIFNRK 120
  121 SAQLENETDT KSLPVEANND NSARKKNEYE MKKKGAQSKQ TNAPKKGKKQ LRKWDDQITE 180
  181 EEQAALNYSS QASSASQTVD NSQLSSIVGN NNKFQKTGSG DVIISDLEMD PNQTISNKSA 240
  241 SSAFSLFSNL IGGKYLKEED LSPILKQMQE HLTKKNVANS IALELCESVK ASLINKKVGS 300
  301 FDTVKNTVNK AFRDRLTQIL TPSTSLDLLH SIRSVRKNEN RPYTISLIGV NGVGKSTTLA 360
  361 KIAYWLLSNN FRILVAACDT FRSGAIEQLG VHVKNLQSLK GSSIELFAQG YGKDSSFVVK 420
  421 NAVEYAKQNS FDVILIDTAG RRHNDQRLMG SLEKFTKATK LDKIFQVAEA LVGTDSLAQA 480
  481 KHFQASLYHR PLDGFIISKV DTVGQLVGVM VGMVYAVRVP IIFVGIGQTY SDLRTLSVDW 540
  541 VVDQLMK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 24.154902 The Structure of the Mammalian SRP Receptor
    2 View Details [179..245] PSI-BLAST 11.522879 N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
    3 View Details [246..547] PSI-BLAST 54.0 No description for 2j289 was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • signal recognition particle binding
    		•  6.13359612945359 bayes_pls_golite062009
  • ribonucleoprotein binding
    		•  3.69979261496156 bayes_pls_golite062009
  • palmitoyltransferase activity
    		•  2.39665981402803 bayes_pls_golite062009
  • protein-cysteine S-palmitoleyltransferase activity
    		•  2.13678994750168 bayes_pls_golite062009
  • protein-cysteine S-acyltransferase activity
    		•  2.13678994750168 bayes_pls_golite062009
  • protein transporter activity
    		•  2.04806587835812 bayes_pls_golite062009
  • transporter activity
    		•  1.71943098913274 bayes_pls_golite062009
  • binding
    		•  1.51276821555775 bayes_pls_golite062009
  • SNAP receptor activity
    		•  1.47915598483249 bayes_pls_golite062009
  • protein binding
    		•  1.08917223347521 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.939682472116899 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.131410992694836 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0936690070284361 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0846345824909659 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0820309452260982 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle