YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3B9.03
Organism:	Schizosaccharomyces pombe
Length:	547 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3B9.03.

Description	E-value	Query Range	Subject Range
gi\|77627979, gi\|... - gi\|77627979\|ref\|NP_001029322.1\| signal recognition particle receptor [Rattus norvegicus], gi\|7677980...	277.0	[0..1]	[547..1]
gi\|109109214, gi... - gi\|109109216\|ref\|XP_001112650.1\| PREDICTED: signal recognition particle receptor ('docking protein')...	275.0	[0..1]	[547..1]
gi\|55729093 - gi\|55729093\|emb\|CAH91283.1\| hypothetical protein [Pongo abelii] gi\|197101205 - gi\|197101205\|ref\|NP_001125759.1\| signal recognition particle receptor [Pongo abelii]	274.0	[0..1]	[547..1]
gi\|30866, gi\|88607 - pir\|\|A29440 signal recognition particle receptor - human, gi\|30866\|emb\|CAA29608.1\| unnamed protein ...	274.0	[0..1]	[547..1]
SRPRA_BOVIN - Signal recognition particle receptor subunit alpha OS=Bos taurus GN=SRPRA PE=2 SV=1	273.0	[0..1]	[547..1]
gi\|49651655, gi\|... - gi\|49651655\|emb\|CAG78596.1\| YALI0F23375p [Yarrowia lipolytica], gi\|4838528\|gb\|AAD31027.1\|AF132597_1 ... gi\|50556754, gi\|... - gi\|50556754\|ref\|XP_505785.1\| YALI0F23375p [Yarrowia lipolytica], gi\|49651655\|emb\|CAG78596.1\| YlSRP10...	266.0	[0..1]	[547..1]
Gtp-bp-PA - The gene GTP-binding protein is referred to in FlyBase by the symbol Dmel\Gtp-bp (CG2522, FBgn001039...	261.0	[0..1]	[547..1]
gi\|148298802, gi... - gi\|148298802\|ref\|NP_001091807.1\| signal recognition particle receptor alpha subunit [Bombyx mori], g...	258.0	[0..1]	[547..1]
gi\|83771777 - gi\|83771777\|dbj\|BAE61907.1\| unnamed protein product [Aspergillus oryzae] gi\|169777149 - gi\|169777149\|ref\|XP_001823040.1\| hypothetical protein [Aspergillus oryzae RIB40]	258.0	[0..1]	[547..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDLFAIVNK GGIVLWKKTN SLVNLKCLQV LFHEAFLSEQ RTVNNTVTFD RYTMQYQEAT  60
   61 QYSIVFVVVF QDLKCMAYSQ SLLNSAHNIF LNLFKEKLED RQVPNEAEVE KLFAPIFNRK 120
  121 SAQLENETDT KSLPVEANND NSARKKNEYE MKKKGAQSKQ TNAPKKGKKQ LRKWDDQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.154902
Match:	2fh5A
Description:	The Structure of the Mammalian SRP Receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
signal recognition particle binding	6.13359612945359	bayes_pls_golite062009
ribonucleoprotein binding	3.69979261496156	bayes_pls_golite062009
palmitoyltransferase activity	2.39665981402803	bayes_pls_golite062009
protein-cysteine S-palmitoleyltransferase activity	2.13678994750168	bayes_pls_golite062009
protein-cysteine S-acyltransferase activity	2.13678994750168	bayes_pls_golite062009
protein transporter activity	2.04806587835812	bayes_pls_golite062009
transporter activity	1.71943098913274	bayes_pls_golite062009
binding	1.51276821555775	bayes_pls_golite062009
SNAP receptor activity	1.47915598483249	bayes_pls_golite062009
protein binding	1.08917223347521	bayes_pls_golite062009
substrate-specific transporter activity	0.939682472116899	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.131410992694836	bayes_pls_golite062009
pyrophosphatase activity	0.0936690070284361	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0846345824909659	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.0820309452260982	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [179-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEEEQAALNY SSQASSASQT VDNSQLSSIV GNNNKFQKTG SGDVIISDLE MDPNQTISNK  60
   61 SASSAFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	1ksfX
Description:	N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [246-547]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFSNLIGGKY LKEEDLSPIL KQMQEHLTKK NVANSIALEL CESVKASLIN KKVGSFDTVK  60
   61 NTVNKAFRDR LTQILTPSTS LDLLHSIRSV RKNENRPYTI SLIGVNGVGK STTLAKIAYW 120
  121 LLSNNFRILV AACDTFRSGA IEQLGVHVKN LQSLKGSSIE LFAQGYGKDS SFVVKNAVEY 180
  181 AKQNSFDVIL IDTAGRRHND QRLMGSLEKF TKATKLDKIF QVAEALVGTD SLAQAKHFQA 240
  241 SLYHRPLDGF IISKVDTVGQ LVGVMVGMVY AVRVPIIFVG IGQTYSDLRT LSVDWVVDQL 300
  301 MK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2j289
Description:	No description for 2j289 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: