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Protein Overview: SPAC1B1.04c

General Information:
Name(s) found: SPAC1B1.04c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • poly(A)-specific ribonuclease complex subunit Pan3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 604 amino acids

    Gene Ontology:
    Cellular Component: PAN complex [ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    mitochondrion [IDALink to PubMed article]
    integral to membrane [IEA]
    cytosol [IDALink to PubMed article]
    Biological Process: mRNA 3'-end processing [ISS]
    postreplication repair [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYATLLMLCT NHLAYSSALS SGKNGAAAQQ AANSPKTVSL MTSSSKAANA LQTHKSSLAR  60
   61 AASAVPFSPS KATTVSLKES ASLTSLSNNK SVSNLNSISG ASSPSGSLVN LHSLTRSASF 120
  121 VPQPSVPNSG QLSNADMSRH ILARFPPFFH NLNEQQQKTT SFFLADDHLK WFTYLTQEFY 180
  181 QFANIPKLPS HVLSYHSLIP RRMIVTVLPV LRYATSIYKV IDGNNGLPYS FVQLRDFTLL 240
  241 NDRNITNVSP WTKVDSPHVI KIREAFTTHA FEQKCMLSFI YFENVALYTN LLLAIVFVYN 300
  301 YLPSCPSLYD LFFASPVFRK RTSSFYFSQP LKATKEVLWC FASQLISALY SIHSSGLAAK 360
  361 MVSLKNVLMV GKMRLAIFGL GIMDVIQEES TEPLTSLQRN DCRDVGLILL ALATDTENVT 420
  421 LSTAKAHLTR LKTIVSTDAS LVELIEVLIF NEELRIQTLL PTMLSYMVNN YESVLLMEDV 480
  481 YETYLAEQVE NDRLLRLLLK LEFLDDRPEY VDDPDWSASG VYFVIRLFRK YMFQVQTIDD 540
  541 ASKKPTLQST TTPPRKLLNK AHLLSCLNKL DAGTDEQILL EDEFTRIIMS FKEVRTISIF 600
  601 EKTC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..491] PSI-BLAST 42.522879 No description for 2fo0A was found.
    2 View Details [492..604] PSI-BLAST 56.30103 MAP kinase p38-gamma

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphotransferase activity, alcohol group as acceptor
    		•  2.32531951245217 bayes_pls_golite062009
  • kinase activity
    		•  2.161759445077 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.11128976205756 bayes_pls_golite062009
  • protein kinase activity
    		•  2.00192391988149 bayes_pls_golite062009
  • transferase activity
    		•  1.80001061545783 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  1.76101721812142 bayes_pls_golite062009
  • binding
    		•  1.72646207655432 bayes_pls_golite062009
  • catalytic activity
    		•  1.21655087018101 bayes_pls_golite062009
  • protein binding
    		•  0.973296165626155 bayes_pls_golite062009
  • molecular adaptor activity
    		•  0.917765749936842 bayes_pls_golite062009
  • RNA binding
    		•  0.884028843939918 bayes_pls_golite062009
  • SH3/SH2 adaptor activity
    		•  0.880781378520002 bayes_pls_golite062009
  • protein binding, bridging
    		•  0.7618053658574 bayes_pls_golite062009
  • ATP binding
    		•  0.0978219864504931 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.0611476803427368 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.050750946930082 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle