YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPAC1B1.04c
Organism: Schizosaccharomyces pombe
Length: 604 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B1.04c.

Description E-value Query
Range
Subject
Range
gi|73993484 - gi|73993484|ref|XP_543150.2| PREDICTED: similar to PABP1-dependent poly A-specific ribonuclease subu...
251.0 [0..16] [603..407]
gi|109120283 - gi|109120283|ref|XP_001097210.1| PREDICTED: similar to PABP1-dependent poly A-specific ribonuclease ...
245.0 [0..16] [603..161]
gi|114649214 - gi|114649214|ref|XP_001136622.1| PREDICTED: PABP1-dependent poly A-specific ribonuclease subunit PAN...
245.0 [0..16] [603..161]
gi|122889278, gi... - gi|68303558|ref|NP_787050.4| PABP1-dependent poly A-specific ribonuclease subunit PAN3 [Homo sapiens...
244.0 [0..16] [603..107]
gi|109496527 - gi|109496527|ref|XP_001068449.1| PREDICTED: similar to PABP-dependent poly(A) nuclease 3 [Rattus nor...
244.0 [0..16] [603..249]

Back

Predicted Domain #1
Region A:
Residues: [1-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYATLLMLCT NHLAYSSALS SGKNGAAAQQ AANSPKTVSL MTSSSKAANA LQTHKSSLAR  60
   61 AASAVPFSPS KATTVSLKES ASLTSLSNNK SVSNLNSISG ASSPSGSLVN LHSLTRSASF 120
  121 VPQPSVPNSG QLSNADMSRH ILARFPPFFH NLNEQQQKTT SFFLADDHLK WFTYLTQEFY 180
  181 QFANIPKLPS HVLSYHSLIP RRMIVTVLPV LRYATSIYKV IDGNNGLPYS FVQLRDFTLL 240
  241 NDRNITNVSP WTKVDSPHVI KIREAFTTHA FEQKCMLSFI YFENVALYTN LLLAIVFVYN 300
  301 YLPSCPSLYD LFFASPVFRK RTSSFYFSQP LKATKEVLWC FASQLISALY SIHSSGLAAK 360
  361 MVSLKNVLMV GKMRLAIFGL GIMDVIQEES TEPLTSLQRN DCRDVGLILL ALATDTENVT 420
  421 LSTAKAHLTR LKTIVSTDAS LVELIEVLIF NEELRIQTLL PTMLSYMVNN YESVLLMEDV 480
  481 YETYLAEQVE N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.522879
Match: 2fo0A
Description: No description for 2fo0A was found.

Predicted functions:

Term Confidence Notes
phosphotransferase activity, alcohol group as acceptor 2.32531951245217 bayes_pls_golite062009
kinase activity 2.161759445077 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 2.11128976205756 bayes_pls_golite062009
protein kinase activity 2.00192391988149 bayes_pls_golite062009
transferase activity 1.80001061545783 bayes_pls_golite062009
protein serine/threonine kinase activity 1.76101721812142 bayes_pls_golite062009
binding 1.72646207655432 bayes_pls_golite062009
catalytic activity 1.21655087018101 bayes_pls_golite062009
protein binding 0.973296165626155 bayes_pls_golite062009
molecular adaptor activity 0.917765749936842 bayes_pls_golite062009
RNA binding 0.884028843939918 bayes_pls_golite062009
SH3/SH2 adaptor activity 0.880781378520002 bayes_pls_golite062009
protein binding, bridging 0.7618053658574 bayes_pls_golite062009
ATP binding 0.0978219864504931 bayes_pls_golite062009
adenyl ribonucleotide binding 0.0611476803427368 bayes_pls_golite062009
adenyl nucleotide binding 0.050750946930082 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [492-604]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRLLRLLLKL EFLDDRPEYV DDPDWSASGV YFVIRLFRKY MFQVQTIDDA SKKPTLQSTT  60
   61 TPPRKLLNKA HLLSCLNKLD AGTDEQILLE DEFTRIIMSF KEVRTISIFE KTC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.30103
Match: 1cm8A
Description: MAP kinase p38-gamma
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle