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Protein Overview: ret2

General Information:
Name(s) found: ret2 / SPCC285.08 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • coatomer delta subunit Ret2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 240 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    COPI vesicle coat [ISSLink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    retrograde vesicle-mediated transport, Golgi to ER [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLAVSIVN RGGKAIISRQ FREMSRVRVE SLLSSFPALV SEKSQNTTVE SDNVRFVYQP  60
   61 LDELYIVLIT NLQSNILQDI DTLHLLSQVV TSICSSLEER EILEYAFEIF TAFDEATSLG 120
  121 YRDNVSLTQI KTYLEMESHE EKIQEIVSRN KEIEATEERK RRIKQLELQK KEAARRAAQN 180
  181 LPSADAYESI GYQTVNTTFA TSNVEDESAM ESYHAAAKAS SAPKAKGMQL GKKKNTSLLY 240
  241

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] PSI-BLAST 64.0 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor; Mu2 adaptin (clathrin coat assembly protein AP50)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • clathrin binding
    		•  3.29076846857007 bayes_pls_golite062009
  • SNAP receptor activity
    		•  2.23518960752054 bayes_pls_golite062009
  • protein transporter activity
    		•  2.04806587835812 bayes_pls_golite062009
  • transporter activity
    		•  1.71943098913274 bayes_pls_golite062009
  • binding
    		•  1.51276821555775 bayes_pls_golite062009
  • signal recognition particle binding
    		•  1.21465932013369 bayes_pls_golite062009
  • protein binding
    		•  1.08917223347521 bayes_pls_golite062009
  • protein-cysteine S-palmitoleyltransferase activity
    		•  1.07022749554273 bayes_pls_golite062009
  • protein-cysteine S-acyltransferase activity
    		•  1.07022749554273 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.939682472116899 bayes_pls_golite062009
  • palmitoyltransferase activity
    		•  0.76687594030379 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.131410992694836 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0936690070284361 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0846345824909659 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0820309452260982 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle