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Protein Overview: bpb1

General Information:
Name(s) found: bpb1 / SPCC962.06c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • zinc finger protein Bpb1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 587 amino acids

    Gene Ontology:
    Cellular Component: commitment complex [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: generation of catalytic spliceosome for first transesterification step [IDALink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSRSVGST GSNNTPLGRR RFDEKPDSLP PLPDANGMSN GYRDSYKSNS RMDHRPDGYH  60
   61 DGRGRRAYRK HYWGHPTPIE EMLPSQMELE TAVKSCMTME QLELYSLNVR LEEITQKLRT 120
  121 GDVVPHHRER SPSPPPQYDN HGRRLNTREI RYKKKLEDER HRIIERAMKM VPGFRAPSDY 180
  181 RRPAKTQEKV YVPVKDYPEI NFIGLLIGPR GHTLKDMEAK SGAKIAIRGK GSVKEGKGRS 240
  241 DPSVRGNMEE DLHCLVTADS EDKINHAIKL IDNVIQTAAS VPEGQNDLKR NQLRQLATLN 300
  301 GTLRDDENQV CQNCGNVGHR RFDCPERINH TMNIVCRHCG SIGHIARDCP VRDQQPPMAD 360
  361 STADREYQSL MQELGGGSAI SNGNGEPQKS IEFSESGAAS PQAGHPPPWA AASTSVSSST 420
  421 SSPAPWAKPA SSAAPSNPAP WQQPAAPQSA PALSMNPSSL PPWQQPTQQS AVQPSNLVPS 480
  481 QNAPFIPGTS APLPPTTFAP PGVPLPPIPG APGMPNLNMS QPPMVPPGMA LPPGMPAPFP 540
  541 GYPAVPAMPG IPGATAPPGA PGSYNTSESS NLNAPPGVSM PNGYSNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] MSA 3.064993 View MSA. No confident structure predictions are available.
    2 View Details [83..243] PSI-BLAST 50.154902 HIV capsid protein, dimerisation domain; HIV-1 capsid protein
    3 View Details [244..301] PSI-BLAST 17.39794 RNA splicing factor 1
    4 View Details [302..368] PSI-BLAST 12.0 HIV nucleocapsid
    5 View Details [369..513] FFAS03 1.13 No description for 2j63A was found.
    6 View Details [514..587] FFAS03 1.8 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.89697146569581 bayes_pls_golite062009
  • protein binding
    		•  1.56588389135086 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
    		•  6.76415077523249 bayes_pls_golite062009
  • mRNA binding
    		•  5.07455187994216 bayes_pls_golite062009
    		• 4.82131641133915 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.28581120742478 bayes_pls_golite062009
  • binding
    		•  3.45962790790935 bayes_pls_golite062009
  • protein binding
    		•  2.21586499514642 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  2.05765562493656 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.01194399592256 bayes_pls_golite062009
  • DNA binding
    		•  1.78469836520678 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.981003625136521 bayes_pls_golite062009
  • transcription factor activity
    		•  0.866815968834173 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.594072241231183 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.489176583045793 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.32222928997178 bayes_pls_golite062009
  • transcription activator activity
    		•  0.210494225017032 bayes_pls_golite062009
  • transcription factor binding
    		•  0.139588254197875 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.1069917291606 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle