| Protein: | bpb1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 587 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bpb1.
| Description | E-value | Query Range |
Subject Range |
|
|
420.0 | [0..44] | [449..90] |
|
|
419.0 | [0..45] | [453..91] |
|
|
416.0 | [0..44] | [453..90] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MLNSRSVGST GSNNTPLGRR RFDEKPDSLP PLPDANGMSN GYRDSYKSNS RMDHRPDGYH 60
61 DGRGRRAYRK HYWGHPTPIE EM
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [83-243] |
1 11 21 31 41 51
| | | | | |
1 LPSQMELETA VKSCMTMEQL ELYSLNVRLE EITQKLRTGD VVPHHRERSP SPPPQYDNHG 60
61 RRLNTREIRY KKKLEDERHR IIERAMKMVP GFRAPSDYRR PAKTQEKVYV PVKDYPEINF 120
121 IGLLIGPRGH TLKDMEAKSG AKIAIRGKGS VKEGKGRSDP S
|
| Detection Method: | |
| Confidence: | 50.154902 |
| Match: | 1e6jP |
| Description: | HIV capsid protein, dimerisation domain; HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.89697146569581 | bayes_pls_golite062009 |
| protein binding | 1.56588389135086 | bayes_pls_golite062009 |
|
Region A: Residues: [244-301] |
1 11 21 31 41 51
| | | | | |
1 VRGNMEEDLH CLVTADSEDK INHAIKLIDN VIQTAASVPE GQNDLKRNQL RQLATLNG
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1k1gA |
| Description: | RNA splicing factor 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.76415077523249 | bayes_pls_golite062009 |
| mRNA binding | 5.07455187994216 | bayes_pls_golite062009 |
| 4.82131641133915 | bayes_pls_golite062009 | |
| nucleic acid binding | 4.28581120742478 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| protein binding | 2.21586499514642 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.05765562493656 | bayes_pls_golite062009 |
| transcription regulator activity | 2.01194399592256 | bayes_pls_golite062009 |
| DNA binding | 1.78469836520678 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.981003625136521 | bayes_pls_golite062009 |
| transcription factor activity | 0.866815968834173 | bayes_pls_golite062009 |
| transcription repressor activity | 0.594072241231183 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| transcription activator activity | 0.210494225017032 | bayes_pls_golite062009 |
| transcription factor binding | 0.139588254197875 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
|
Region A: Residues: [302-368] |
1 11 21 31 41 51
| | | | | |
1 TLRDDENQVC QNCGNVGHRR FDCPERINHT MNIVCRHCGS IGHIARDCPV RDQQPPMADS 60
61 TADREYQ
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [369-513] |
1 11 21 31 41 51
| | | | | |
1 SLMQELGGGS AISNGNGEPQ KSIEFSESGA ASPQAGHPPP WAAASTSVSS STSSPAPWAK 60
61 PASSAAPSNP APWQQPAAPQ SAPALSMNPS SLPPWQQPTQ QSAVQPSNLV PSQNAPFIPG 120
121 TSAPLPPTTF APPGVPLPPI PGAPG
|
| Detection Method: | |
| Confidence: | 1.13 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [514-587] |
1 11 21 31 41 51
| | | | | |
1 MPNLNMSQPP MVPPGMALPP GMPAPFPGYP AVPAMPGIPG ATAPPGAPGS YNTSESSNLN 60
61 APPGVSMPNG YSNR
|
| Detection Method: | |
| Confidence: | 1.8 |
| Match: | 1wckA |
| Description: | Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore. |
Matching Structure (courtesy of the PDB): |
|
