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Protein Overview: SPBC887.18c

General Information:
Name(s) found: SPBC887.18c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • transcription adaptor protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 339 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    SAGA complex [ISSLink to PubMed article]
    Biological Process: chromatin remodeling [IC]
    transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    histone acetylation [ISSLink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    Molecular Function: transcription cofactor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGVTVQKV QSASSNGHKP NTVISQIISE MQSLLGSSFE VYTKTMTDFL IGQLSRKEMK  60
   61 SMLLTFAGKS NFDKLHNSII FHILKLMQKN NDTFSALHHL PWFKRKKVDN SLFLHKKISS 120
  121 QNAQVRLIKR IVMSLSYKDR ARIKTALKEK PVTPSLISGL LLETRIAKLP KIPVSRDKLN 180
  181 SVFVNDIKAG YVAPLACETL ELPDSESLKE RITAISLENG LLGGVQKGVS DIILAGLESH 240
  241 LKNILSRCFS ILNKNIRQKN TENDAAGFTI NDLNLAWTIE PHAFVEQYPQ KLRMPFLLHD 300
  301 SYTEDEISIC AESPSYMLAS NDAQSDRNSV ASLLDEVLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] MSA 5.036994 View MSA. No confident structure predictions are available.
    2 View Details [135..191] deduced N/A No confident structure predictions are available.
    3 View Details [192..339] FFAS03 0.976 TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • histone acetyltransferase activity
    		•  5.93249134612505 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  5.93249134612505 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.49084162254966 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  4.4864586197085 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.2172829451557 bayes_pls_golite062009
  • DNA binding
    		•  4.00167809338753 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.91807454227165 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.91533222675137 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.72299085850948 bayes_pls_golite062009
  • binding
    		•  3.67149228723241 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.38996237245502 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.35419529667223 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.18312128320637 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.02428691626433 bayes_pls_golite062009
  • transcription factor activity
    		•  2.18855864512878 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  1.61443429710414 bayes_pls_golite062009
  • protein binding
    		•  1.22636497573761 bayes_pls_golite062009
  • transcription activator activity
    		•  1.12739348005764 bayes_pls_golite062009
  • transcription factor binding
    		•  1.01773884290535 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.976797801726735 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.840442755533537 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.621482805601238 bayes_pls_golite062009
  • histone binding
    		•  0.184823910505751 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.126825123711624 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle