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Protein Overview: cyp9

General Information:
Name(s) found: cyp9 / SPCC553.04 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • WD repeat containing cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 610 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [ISSLink to PubMed article]
    Biological Process: regulation of histone methylation [ISSLink to PubMed article]
    chromatin silencing [ISSLink to PubMed article]
    protein folding [IEA]
    Molecular Function: peptidyl-prolyl cis-trans isomerase activity [ISSLink to PubMed article]
    histone binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDGASPVDR DVSPVGLPKK RIKQNHDQVF LHNLPDAPRY TKSYMHNAEI YKCFPTKSNY  60
   61 ILSVSYDGYV KFWHKTPNGV EYIKEFHAHN AMLLSAELSQ DERLFITGAD DKSLKVFDVE 120
  121 SIDLVNIIDL EFLPKAICCF NSPSLKTSLI AVSSAESPLI FFFESGGDGE VLYTVKKHTA 180
  181 PVHCLRYLST LDCFLSIDIG GMVEYWSPEE PFQKPDTAEL FNMKSQTDLY IFKKQKSVPT 240
  241 SLEVSHFENF WSTISYPDCK VRVFDTKSGR AILELDENPS NAAKKVEALF EKEDTESSYY 300
  301 MSHVELGRRI AIERDIEKHG LTVGTTAIFD ESEKYLLYGS IVGIKVVSID NGTVVRIYGK 360
  361 DEAVRFTRLS LYQQAPKKSN LPSLDVIASN NPLVEESFQK DPTLFATAWK KQRFYLFSNM 420
  421 STKFTLSDRD VYNEQVLPVT NNEGRQENGN ILLGKAAIIH TTQGDISIKL YPEEAPKAVQ 480
  481 NFTTHAENGY YDNTIFHRII KNFMIQGGDP LGDGTGGESI WKKDFEDEIS PNLKHDRPFT 540
  541 VSMANSGPNT NGSQFFITTD LTPWLDGKHT IFARAYAGLD VVHRIEQGET DKYDRPLEPT 600
  601 KIINISIVYT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..351] PSI-BLAST 50.0 No description for 2ovpB was found.
    2 View Details [352..408] PSI-BLAST 21.221849 Actin interacting protein 1
    3 View Details [409..610] PSI-BLAST 30.09691 solution structure of cyclophilin like 1(PPIL1) and insights into its interaction with SKIP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • peptidyl-prolyl cis-trans isomerase activity
    		•  3.73853378771688 bayes_pls_golite062009
  • cis-trans isomerase activity
    		•  3.66963215732405 bayes_pls_golite062009
  • RNA binding
    		•  2.94609837984526 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.0418369369681 bayes_pls_golite062009
  • isomerase activity
    		•  1.96529188741504 bayes_pls_golite062009
  • binding
    		•  1.65866393331484 bayes_pls_golite062009
  • mRNA binding
    		•  1.45537055700871 bayes_pls_golite062009
  • unfolded protein binding
    		•  1.38124355054041 bayes_pls_golite062009
  • catalytic activity
    		•  0.748655649755714 bayes_pls_golite062009
  • protein deacetylase activity
    		•  0.546970732080881 bayes_pls_golite062009
  • histone deacetylase activity
    		•  0.506677106948149 bayes_pls_golite062009
  • hydrolase activity
    		•  0.363074952403273 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  0.350192178539189 bayes_pls_golite062009
  • histone binding
    		•  0.268719695649015 bayes_pls_golite062009
  • protein binding
    		•  0.230077752280113 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle