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Protein Overview: sfc1

General Information:
Name(s) found: sfc1 / SPAC6F12.11c [Sanger Pombe]
Description(s) found:
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  • gi|6840798|emb|CAB11095.2| transcription factor TFIIIC complex A box associated subunit Sfc1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|20141845|sp|O14229.2|SFC1_SCHPO RecName: Full=Transcription factor tau subunit sfc1; AltName: Full=TFIIIC subunit sfc1; AltName: Full=Transcription factor C subunit 1 [NCBI NR]
  • gi|19114209|ref|NP_593297.1| transcription factor TFIIIC complex A box associated subunit Sfc1 [Schizosaccharomyces pombe] [NCBI NR]
  • transcription factor TFIIIC complex A box associated subunit Sfc1 [Sanger Pombe]
  • Uncharacterized protein C6F12.11c - Schizosaccharomyces pombe (Fission yeast) [Swiss-Prot]
  • Transcription factor tau subunit sfc1 OS=Schizosaccharomyces pombe GN=sfc1 PE=1 SV=2 [Swiss-Prot]
  • RNA POLYMERASE III TRANSCRIPTION FACTOR TFIIIC SUBUNIT; A BOX ASSOCIATED BINDING SUBUNIT: CAB11095;O14229; [pompepVF.fasta]
  • RNA POLYMERASE III TRANSCRIPTION FACTOR (TF)IIIC SUBUNIT; A BOX ASSOCIATED BINDING SUBUNIT: CAB11095;O14229; [pompepV13]
  • Hypothetical protein C6F12.11c in chromosome I [pompep4896]
  • |sfc1||RNA polymerase III Transcription factor TFIIIC subunit [pompepnew.fasta]
  • |sfc1||transcription factor activity|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • RNA polymerase III Transcription factor (TF)IIIC subunit; A box associated binding subunit [Schizosaccharomyces pombe]gi|6840798|emb|CAB11095.2| SPAC6F12.11c [Schizosaccharomyces pombe]gi|20141845|sp|O14229|YDVB_SCHPO Hypothetical protein C6F12.11c in c [nrdb_11152004_Chlamydomonas]
  • |sfc1||transcription factor TFIIIC complex A box associated subunit|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O14229) Hypothetical protein C6F12.11c in chromosome I [pompep4896_normal_reversed]
  • |sfc1||transcription factor TFIIIC complex A box associated subunit Sfc1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC6F12.11c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Uncharacterized protein C6F12.11c [nr-271106-contam.fasta]
  • hypothetical protein SPAC6F12.11c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Transcription factor tau subunit sfc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfc1 PE=1 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 456 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    transcription factor TFIIIC complex [IDALink to PubMed article]
    Biological Process: transcription initiation from RNA polymerase III promoter [IDALink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    Molecular Function: chromatin insulator sequence binding [IDALink to PubMed article]
    RNA polymerase III transcription factor activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLKISDNE YALIEHPGFA NNKDAFFQTL GGVQSIQKAC QTSFQNPKQA LLELNLRPKD  60
   61 KYHHPVQARV QSRNDLLVTI KKMDNSVQNV SRIRQVFLFR DMADFQYSTQ NSPFVQKLDS 120
  121 TLRVLDYNAI NKFSIDLTPV QRKHVDMPPP PVFSQTSLPM SYNFLQNPLV GRVRLPNGKT 180
  181 TIVNLKGQCR VWIITTNMGV ESVPTCRHSK LGEPSKTIQE VIEALKPLFE KRPVWTRRAL 240
  241 LNHLDPSYTH YLKFALPYLS YLWTSGPFRD TYTRFGYDPR KDSNAAAYQA LFFKLKLNGK 300
  301 HKGTKTHVFD GKTLFPTNRV YQVCDIVDPT IAPLLKDTQL RSECHRDTGW YRSGRYYKVR 360
  361 DLMREKLFAL IEGEMPSEVA VNMILNAEEV EESDRYSNFD EQDNTDLNDT VRGLNTSATD 420
  421 DRINDLMRNL MKRSQEHEGF EDLEEIDDDY DDIFGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] MSA 6.048994 View MSA. No confident structure predictions are available.
    2 View Details [102..214] deduced N/A No confident structure predictions are available.
    3 View Details [215..301] FFAS03 1.06 DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE
    4 View Details [302..456] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  5.23858959608048 bayes_pls_golite062009
  • DNA binding
    		•  4.54024488199476 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.30331577005505 bayes_pls_golite062009
  • transcription factor activity
    		•  3.82269332595313 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  3.35557958497305 bayes_pls_golite062009
  • binding
    		•  3.17811844148923 bayes_pls_golite062009
  • transcription activator activity
    		•  2.13702350917359 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.12567455635303 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.9708626903609 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.50332889556988 bayes_pls_golite062009
  • transcription factor binding
    		•  0.752335897765285 bayes_pls_golite062009
  • protein binding
    		•  0.626618806841206 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle